Leptolyngbyaceae cyanobacterium JSC-12

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Leptolyngbyales

Family

Leptolyngbyaceae

Genus

Description

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature45
Temperature rangethermophilic
HabitatChocolate Pots Hot Springs, Yellowstone National Park, WY, USA; iron-depositing hot spring; microbial mat; phototrophic mat
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Leptolyngbyaceae cyanobacterium JSC-12 OsccyDRAFT_OTA.1_C20, whole

Gene Summary

Adenine Count

1453537 bp

Thymine Count

1449543 bp

Guanine Count

1302611 bp

Cytosine Count

1322800 bp

Genome Length

5528491 bp

Protein-coding Genes

4780 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna 2-thiocytidine(32) synthetase ttcaOSCCYDRAFT_RS11280B0CEK4Negative2560170 - 256098830553.2
ligase-associated dna damage response endonuclease pdemOSCCYDRAFT_RS11285Not AvailablePositive2561031 - 256168124131.3
pspa/im30 family proteinOSCCYDRAFT_RS11290Q55707Positive2561909 - 256268228148.4
thioredoxinOSCCYDRAFT_RS11295P20857Positive2562832 - 256315511921.4
ll-diaminopimelate aminotransferaseOSCCYDRAFT_RS11300Q3Z8H5Positive2563269 - 256449244116.0
duf2079 domain-containing proteinOSCCYDRAFT_RS11305Not AvailableNegative2564552 - 256596152234.7
hypothetical proteinOSCCYDRAFT_RS11310Not AvailableNegative2566073 - 256692731297.4
duf1517 domain-containing proteinOSCCYDRAFT_RS11315Not AvailableNegative2566960 - 256755921949.9
hypothetical proteinOSCCYDRAFT_RS11320Not AvailableNegative2567695 - 256799711045.5
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigOSCCYDRAFT_RS11325Not AvailableNegative2567964 - 256836214962.4

Displaying genes 7131 – 7140 of 9794 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

189 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da

Displaying 1–10 of 189 metabolites

Health Effects

No health effects information available for this bacterium.