Leptolyngbyaceae cyanobacterium JSC-12

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Leptolyngbyales

Family

Leptolyngbyaceae

Genus

Description

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature45
Temperature rangethermophilic
HabitatChocolate Pots Hot Springs, Yellowstone National Park, WY, USA; iron-depositing hot spring; microbial mat; phototrophic mat
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Leptolyngbyaceae cyanobacterium JSC-12 OsccyDRAFT_OTA.1_C20, whole

Gene Summary

Adenine Count

1453537 bp

Thymine Count

1449543 bp

Guanine Count

1302611 bp

Cytosine Count

1322800 bp

Genome Length

5528491 bp

Protein-coding Genes

4780 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
serine/threonine protein kinaseOsccyDRAFT_0293P73469Positive334012 - 33547553260.9
phosphate abc transporter substrate-binding protein, phot familyOsccyDRAFT_0294Not AvailablePositive335535 - 33661438589.7
putative tim-barrel protein, nifr3 familyOsccyDRAFT_0295Q55724Positive336708 - 33778739630.9
hypothetical proteinOsccyDRAFT_0296Not AvailablePositive337867 - 33820212730.3
signal transduction histidine kinase regulating c4-dicarboxylate transport systemOsccyDRAFT_0297Not AvailableNegative338726 - 34089180694.0
set domain-containing proteinOsccyDRAFT_0298Not AvailableNegative340988 - 34159924032.3
hypothetical proteinOsccyDRAFT_0299Not AvailableNegative341608 - 34257336263.9
condensin subunit smcOsccyDRAFT_0300P73340Negative342619 - 346326141059.0
Trna-glnNot AvailableNot AvailablePositive346545 - 346616Not Available
hypothetical proteinOsccyDRAFT_0302Q55587Positive346959 - 34839253462.5

Displaying genes 271 – 280 of 9794 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

189 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da

Displaying 1–10 of 189 metabolites

Health Effects

No health effects information available for this bacterium.