Sphingobium indicum B90A

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium indicum B90A is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits an aerobic mode of respiration. The optimal growth temperature for this microbe is approximately 28.0°C, suggesting a preference for moderate climate conditions typical of many soil habitats. As an aerobic organism, S. indicum B90A relies on oxygen for its metabolic processes, which may influence its distribution within soil profiles where oxygen availability varies. The identification of S. indicum B90A contributes to our understanding of microbial diversity in terrestrial ecosystems and highlights its potential role in biogeochemical cycles. Given its aerobic nature and specific habitat preferences, this bacterium may play a crucial part in the degradation of organic matter and the cycling of nutrients in soil environments. Further exploration of its metabolic capabilities could provide insights into its ecological functions and potential applications in bioremediation or soil health management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium indicum
StrainB90A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sphingobium indicum B90A
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium indicum B90A chromosome, complete genome.

Gene Summary

Adenine Count

641065 bp

Thymine Count

638558 bp

Guanine Count

1187513 bp

Cytosine Count

1187186 bp

Genome Length

3654322 bp

Protein-coding Genes

3481 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
murein biosynthesis integral membrane protein murjSIDU_RS09850O05467Positive2017914 - 201950356267.9
tryptophan--trna ligaseSIDU_RS09855Q9AC05Positive2019508 - 202051236648.1
duf4136 domain-containing proteinSIDU_RS09860Not AvailablePositive2020709 - 202135923427.8
peptidylprolyl isomeraseSIDU_RS09865Not AvailableNegative2021605 - 202221021102.5
chromosomal replication initiator protein dnaaSIDU_RS09870Q1GN68Negative2022242 - 202365151446.0
30s ribosomal protein s20SIDU_RS09875A5VG07Negative2024096 - 20243599386.58
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseSIDU_RS09880A5VG06Negative2024479 - 202529129335.6
class i sam-dependent methyltransferaseSIDU_RS09885Q9X3X2Positive2025417 - 202614827655.0
2-polyprenylphenol 6-hydroxylaseSIDU_RS09890B1XWR5Positive2026198 - 202773956681.9
zinc-binding dehydrogenaseSIDU_RS09895Not AvailableNegative2027898 - 202901339530.4

Displaying genes 2001 – 2010 of 3833 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

251 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000228(3R,4S,5S,6R)-pentachlorocyclohexeneC6H5Cl5Chemical structure of (3R,4S,5S,6R)-pentachlorocyclohexeneNot available
Average254.36Da
Monoisotopic251.8833887Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000249(2E,4E)-2,4-dichloromuconateC6H2Cl2O4Chemical structure of (2E,4E)-2,4-dichloromuconateNot available
Average208.98Da
Monoisotopic207.9341111Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 251 metabolites

Health Effects

No health effects information available for this bacterium.