Sphingobium indicum B90A

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium indicum B90A is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits an aerobic mode of respiration. The optimal growth temperature for this microbe is approximately 28.0°C, suggesting a preference for moderate climate conditions typical of many soil habitats. As an aerobic organism, S. indicum B90A relies on oxygen for its metabolic processes, which may influence its distribution within soil profiles where oxygen availability varies. The identification of S. indicum B90A contributes to our understanding of microbial diversity in terrestrial ecosystems and highlights its potential role in biogeochemical cycles. Given its aerobic nature and specific habitat preferences, this bacterium may play a crucial part in the degradation of organic matter and the cycling of nutrients in soil environments. Further exploration of its metabolic capabilities could provide insights into its ecological functions and potential applications in bioremediation or soil health management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium indicum
StrainB90A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sphingobium indicum B90A
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium indicum B90A chromosome, complete genome.

Gene Summary

Adenine Count

641065 bp

Thymine Count

638558 bp

Guanine Count

1187513 bp

Cytosine Count

1187186 bp

Genome Length

3654322 bp

Protein-coding Genes

3481 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase-binding protein dksaSIDU_RS08065P0CAU3Negative1663345 - 166380917799.8
hypothetical proteinSIDU_RS08070Not AvailableNegative1664386 - 166495219965.5
pep-cterm sorting domain-containing proteinSIDU_RS19260Not AvailablePositive1665023 - 16651213211.09
host attachment family proteinSIDU_RS08075Not AvailableNegative1665174 - 166561416310.2
serine--trna ligaseSIDU_RS08080Q2GA28Positive1665712 - 166698946720.6
5'/3'-nucleotidase sureSIDU_RS08085A5V3Z0Positive1667078 - 166785127448.7
trka family potassium uptake proteinSIDU_RS08090O27564Positive1668033 - 166908238224.4
30s ribosomal protein s12 methylthiotransferase rimoSIDU_RS08095Q1GV83Positive1669131 - 167051350200.0
pdac/sigv domain-containing proteinSIDU_RS08100Not AvailableNegative1670607 - 167146130475.1
hypothetical proteinSIDU_RS08105Not AvailableNegative1671461 - 16716647128.41

Displaying genes 1651 – 1660 of 3833 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

251 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000228(3R,4S,5S,6R)-pentachlorocyclohexeneC6H5Cl5Chemical structure of (3R,4S,5S,6R)-pentachlorocyclohexeneNot available
Average254.36Da
Monoisotopic251.8833887Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000249(2E,4E)-2,4-dichloromuconateC6H2Cl2O4Chemical structure of (2E,4E)-2,4-dichloromuconateNot available
Average208.98Da
Monoisotopic207.9341111Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 251 metabolites

Health Effects

No health effects information available for this bacterium.