Sphingobium indicum B90A

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium indicum B90A is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits an aerobic mode of respiration. The optimal growth temperature for this microbe is approximately 28.0°C, suggesting a preference for moderate climate conditions typical of many soil habitats. As an aerobic organism, S. indicum B90A relies on oxygen for its metabolic processes, which may influence its distribution within soil profiles where oxygen availability varies. The identification of S. indicum B90A contributes to our understanding of microbial diversity in terrestrial ecosystems and highlights its potential role in biogeochemical cycles. Given its aerobic nature and specific habitat preferences, this bacterium may play a crucial part in the degradation of organic matter and the cycling of nutrients in soil environments. Further exploration of its metabolic capabilities could provide insights into its ecological functions and potential applications in bioremediation or soil health management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium indicum
StrainB90A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sphingobium indicum B90A
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium indicum B90A chromosome, complete genome.

Gene Summary

Adenine Count

641065 bp

Thymine Count

638558 bp

Guanine Count

1187513 bp

Cytosine Count

1187186 bp

Genome Length

3654322 bp

Protein-coding Genes

3481 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methylenetetrahydrofolate--trna-(uracil(54)- c(5))-methyltransferase (fadh(2)-oxidizing) trmfoSIDU_RS07460Q1GTZ7Positive1540077 - 154141447995.7
ef-hand domain-containing proteinSIDU_RS07465Not AvailableNegative1541419 - 154188316569.4
hypothetical proteinSIDU_RS07470Not AvailableNegative1541893 - 154253423541.3
tad domain-containing proteinSIDU_RS07475Not AvailablePositive1542681 - 154472074097.6
tade/tadg family type iv pilus assembly proteinSIDU_RS07480Not AvailablePositive1544720 - 154533121904.9
tade/tadg family type iv pilus assembly proteinSIDU_RS07485Not AvailablePositive1545328 - 154601124410.2
pyruvate dehydrogenase complex e1 component subunit betaSIDU_RS07490O66113Negative1546048 - 154743048973.6
pyruvate dehydrogenase (acetyl-transferring) e1 component subunit alphaSIDU_RS07495O66112Negative1547430 - 154850639377.8
septum formation initiator family proteinSIDU_RS07500Not AvailableNegative1548633 - 154894411604.3
phosphopyruvate hydrataseSIDU_RS07505Q2G662Negative1549021 - 155029544753.3

Displaying genes 1531 – 1540 of 3833 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

251 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000228(3R,4S,5S,6R)-pentachlorocyclohexeneC6H5Cl5Chemical structure of (3R,4S,5S,6R)-pentachlorocyclohexeneNot available
Average254.36Da
Monoisotopic251.8833887Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000249(2E,4E)-2,4-dichloromuconateC6H2Cl2O4Chemical structure of (2E,4E)-2,4-dichloromuconateNot available
Average208.98Da
Monoisotopic207.9341111Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 251 metabolites

Health Effects

No health effects information available for this bacterium.