Halopiger xanaduensis SH-6

Non-motile

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Natrialbaceae

Genus

Halopiger

Description

Halopiger xanaduensis SH-6.This strain will be used for comparative genome analysis. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyNatrialbaceae
GenusHalopiger
SpeciesHalopiger xanaduensis
StrainSH-6

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNo
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSalinewater- Soil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halopiger xanaduensis SH-6 plasmid pHALXA03, complete sequence.

Gene Summary

Adenine Count

12969 bp

Thymine Count

13057 bp

Guanine Count

21256 bp

Cytosine Count

21481 bp

Genome Length

68763 bp

Protein-coding Genes

98 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mate family efflux transporterHALXA_RS15100Not AvailableNegative3085580 - 308702550051.9
hypothetical proteinHALXA_RS15105Not AvailablePositive3087196 - 308756113552.3
mandelate racemase/muconate lactonizing enzyme family proteinHALXA_RS15110Not AvailableNegative3088416 - 308965145930.6
aldehyde dehydrogenase family proteinHALXA_RS15115Not AvailableNegative3089830 - 309127851289.3
fumarylacetoacetate hydrolase family proteinHALXA_RS15120Not AvailablePositive3091453 - 309234332293.4
abc transporter substrate-binding proteinHALXA_RS15125Not AvailableNegative3092743 - 309456969083.6
d-xylose 1-dehydrogenase gfo6HALXA_RS15130Not AvailableNegative3094729 - 309580239079.1
abc transporter atp-binding proteinHALXA_RS15135Not AvailablePositive3096086 - 309714739478.4
abc transporter atp-binding proteinHALXA_RS15140Not AvailablePositive3097144 - 309830443367.4
hypothetical proteinHALXA_RS21730Not AvailableNegative3098454 - 30986818262.91

Displaying genes 3221 – 3230 of 3973 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.