Thermodesulfobacterium geofontis OPF15

RodAnaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Thermodesulfobacteria

Order

Thermodesulfobacteriales

Family

Thermodesulfobacteriaceae

Genus

Thermodesulfobacterium

Description

Thermodesulfobacterium geofontis OPF15 is a rod-shaped, anaerobic bacterium predominantly found in freshwater environments. This microbe thrives in oxygen-depleted conditions, where it plays a crucial role in biogeochemical cycles. The rod morphology of T. geofontis OPF15 is indicative of its adaptation to its specific habitat, which may influence its motility and nutrient uptake mechanisms. As an anaerobe, T. geofontis OPF15 contributes to the degradation of organic matter in freshwater ecosystems, potentially facilitating the transformation of sulfur compounds. The metabolic pathways utilized by this organism are likely to be pivotal in maintaining the redox balance within its habitat. Given its anaerobic nature, T. geofontis OPF15 may also interact with various microbial communities, impacting the overall microbial diversity and functioning of freshwater ecosystems. Overall, the presence of Thermodesulfobacterium geofontis OPF15 in freshwater environments highlights the importance of anaerobic microorganisms in nutrient cycling and ecosystem dynamics, providing insights into the complexities of microbial interactions in low-oxygen conditions.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassThermodesulfobacteria
OrderThermodesulfobacteriales
FamilyThermodesulfobacteriaceae
GenusThermodesulfobacterium
SpeciesThermodesulfobacterium geofontis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatFresh water
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thermodesulfobacterium geofontis OPF15

Accession NumberNC_015682.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

1649 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaTOPB45_RS00010Not Available+46 - 138051884.1
fad-binding oxidoreductaseTOPB45_RS00015Not Available+1373 - 275851894.3
atp-binding proteinTOPB45_RS00020Not Available+2773 - 352829700.6
lytic transglycosylase domain-containing proteinTOPB45_RS00025Not Available-3607 - 419121972.8
mechanosensitive ion channel family proteinTOPB45_RS00030Not Available+4292 - 532039290.9
tfp pilus assembly protein fimt/fimuTOPB45_RS00035Not Available+5369 - 586318208.3
prepilin-type n-terminal cleavage/methylation domain-containing proteinTOPB45_RS00040Not Available+5857 - 619511619.2
pilw family proteinTOPB45_RS00045Not Available+6203 - 708132821.2
hypothetical proteinTOPB45_RS00050Not Available+7091 - 858753711.7
prepilin peptidaseTOPB45_RS00055Not Available-8584 - 934528853.6

Displaying genes 1 – 10 of 1701 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

20 records
Metabolite IDMetabolite nameStructureCAS number
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da
BASm00034334-amino-4-deoxychorismateC10H10NO5Chemical structure of 4-amino-4-deoxychorismate133442-18-9
Average224.193Da
Monoisotopic224.056446006Da
BASm00037505-deoxy-D-glucuronateC6H9O6Chemical structure of 5-deoxy-D-glucuronateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm0003926sirohemeC42H36FeN4O16Not available52553-42-1
Average908.611Da
Monoisotopic908.151956Da
BASm0004165L-ascorbate 6-phosphateC6H6O9PChemical structure of L-ascorbate 6-phosphateNot available
Average253.08Da
Monoisotopic252.976589511Da
BASm0005084N(alpha)-acetyl-L-methionineC7H12NO3SChemical structure of N(alpha)-acetyl-L-methionineNot available
Average190.24Da
Monoisotopic190.054338004Da
BASm00107383-phosphoshikimateC7H8O8PChemical structure of 3-phosphoshikimateNot available
Average251.108Da
Monoisotopic250.997324955Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014039L-Lactic acidC3H6O3Chemical structure of L-Lactic acid79-33-4
Average90.0779Da
Monoisotopic90.031694058Da

Displaying 11–20 of 20 metabolites