Calditerrivibrio nitroreducens DSM 19672

Gram-negativeovoidNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Deferribacterota

Class

Deferribacteres

Order

Deferribacterales

Family

Calditerrivibrionaceae

Genus

Calditerrivibrio

Description

Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) is an anaerobic, moderately thermophilic, nitrate-reducing, Gram-negative bacterium isolated from hot spring water from Yumata, Nagano, Japan. The cells are non-sporulating, motile by means of a single polar flagellum, vibrio-shaped and 1.4-2.0 um long. The optimal temperature for growth is 55 degrees Celsius. The pH range for growth is between 7.0-7.5. C.nitroreducens grows best in basal medium without the addition of NaCl. Acetate, pyruvate, lactate, fumarate, succinate, malate, yeast extract, peptone and Casamino acids are utilized as electron donors, with nitrate as the only electron acceptor. Ammonium is the end product from nitrate. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/49523 and PMID: 18599715). (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Deferribacterota
Class	Deferribacteres
Order	Deferribacterales
Family	Calditerrivibrionaceae
Genus	Calditerrivibrio
Species	Calditerrivibrio nitroreducens
Strain	DSM 19672

Profile

Physiology
Gram staining properties	Negative
Shape	ovoid
Mobility	No
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Anaerobic
Optimal temperature	55
Temperature range	Thermophilic
Habitat	HostAssociated
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Not Available
Pathogenicity	No

Genome Summary

Calditerrivibrio nitroreducens DSM 19672

NC_014749.1 NC_014758.1

Gene Summary

Adenine Count

20734 bp

Thymine Count

19751 bp

Guanine Count

9827 bp

Cytosine Count

8405 bp

Genome Length

58717 bp

Protein-coding Genes

58 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
Trna-lys	Not Available	Not Available	Positive	384363 - 384435	Not Available
Trna-glu	Not Available	Not Available	Positive	384439 - 384513	Not Available
Trna-val	Not Available	Not Available	Positive	384523 - 384595	Not Available
Trna-asp	Not Available	Not Available	Positive	384602 - 384675	Not Available
ssra-binding protein smpb	CALNI_RS01880	Not Available	Positive	384727 - 385182	17676.6
hypothetical protein	CALNI_RS01885	Not Available	Negative	385147 - 385551	14804.7
hypothetical protein	CALNI_RS01890	Not Available	Negative	385544 - 386059	18929.2
crp/fnr family transcriptional regulator	CALNI_RS10765	Not Available	Negative	386062 - 386544	18288.2
class ii fumarate hydratase	CALNI_RS01900	Not Available	Positive	386603 - 387979	50003.1
5-oxoprolinase subunit pxpb	CALNI_RS01905	Not Available	Positive	387983 - 388705	27826.8

Displaying genes 441 – 450 of 2180 in total

Pathways

1295 pathways

2,3-Dihydroxybenzoate Biosynthesis pathway thumbnail

2,3-Dihydroxybenzoate Biosynthesis

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides pathway thumbnail

Biosynthesis of Siderophore Group Nonribosomal Peptides

Biosynthesis of Siderophore Group Nonribosomal Peptides

Lysine Biosynthesis pathway thumbnail

Lysine Biosynthesis

Lysine Biosynthesis

Proline Metabolism pathway thumbnail

Proline Metabolism

Proline Metabolism

Palmitate Biosynthesis pathway thumbnail

Palmitate Biosynthesis

Palmitate Biosynthesis

Fatty Acid Elongation (Saturated) pathway thumbnail

Fatty Acid Elongation (Saturated)

Fatty Acid Elongation (Saturated)

tRNA Charging pathway thumbnail

Glycine Biosynthesis pathway thumbnail

Glycine Biosynthesis

Glycine Biosynthesis

Show All 1295 Pathways

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5		Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000592	(S)-1-phenylethanolC8H10O		Not available	Average122.1644Da Monoisotopic122.0731649Da
BASm0000989	GlycerolC3H8O3		`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001225	dodecanoateC12H23O2		Not available	Average199.3098Da Monoisotopic199.169805Da
BASm0001244	2-succinylbenzoateC11H8O5		`27415-09-04`	Average220.181Da Monoisotopic220.038270517Da
BASm0001639	CobinamideC48H72CoN11O8		`13497-85-3`	Average990.0874Da Monoisotopic989.4897335Da
BASm0001661	Cu(2+)Cu		`7440-50-8`	Average63.546Da Monoisotopic62.929601079Da
BASm0001696	2-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2		Not available	Average259.349Da Monoisotopic259.15722892Da
BASm0001785	(2R,3R)-tartrateC4H6O6		`87-69-4`	Average150.0868Da Monoisotopic150.0164379Da
BASm0001808	corynebactinC39H42N6O18		Not available	Average882.789Da Monoisotopic882.2555585Da

Displaying 1–10 of 1619 metabolites

Health Effects

No health effects information available for this bacterium.