Calditerrivibrio nitroreducens DSM 19672

Gram-negativeovoidNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Deferribacterota

Class

Deferribacteres

Order

Deferribacterales

Family

Calditerrivibrionaceae

Genus

Calditerrivibrio

Description

Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) is an anaerobic, moderately thermophilic, nitrate-reducing, Gram-negative bacterium isolated from hot spring water from Yumata, Nagano, Japan. The cells are non-sporulating, motile by means of a single polar flagellum, vibrio-shaped and 1.4-2.0 um long. The optimal temperature for growth is 55 degrees Celsius. The pH range for growth is between 7.0-7.5. C.nitroreducens grows best in basal medium without the addition of NaCl. Acetate, pyruvate, lactate, fumarate, succinate, malate, yeast extract, peptone and Casamino acids are utilized as electron donors, with nitrate as the only electron acceptor. Ammonium is the end product from nitrate. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/49523 and PMID: 18599715). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumDeferribacterota
ClassDeferribacteres
OrderDeferribacterales
FamilyCalditerrivibrionaceae
GenusCalditerrivibrio
SpeciesCalditerrivibrio nitroreducens
StrainDSM 19672

Profile

Physiology
Gram staining propertiesNegative
Shapeovoid
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Calditerrivibrio nitroreducens DSM 19672
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature55
Temperature rangeThermophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Calditerrivibrio nitroreducens DSM 19672

NC_014749.1NC_014758.1

Gene Summary

Adenine Count

20734 bp

Thymine Count

19751 bp

Guanine Count

9827 bp

Cytosine Count

8405 bp

Genome Length

58717 bp

Protein-coding Genes

58 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l9CALNI_RS00515Not AvailablePositive99613 - 10005916882.7
replicative dna helicaseCALNI_RS00520Not AvailablePositive100046 - 10137749810.1
udp-3-o-acyl-n-acetylglucosamine deacetylaseCALNI_RS00525Not AvailablePositive101489 - 10241834144.6
hypothetical proteinCALNI_RS00530Not AvailableNegative102449 - 10289516365.8
nucleoside recognition domain-containing proteinCALNI_RS00535Not AvailableNegative102886 - 10324812655.4
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinaseCALNI_RS00540Not AvailableNegative103307 - 10409828180.2
dna polymerase iii subunit alphaCALNI_RS00545Not AvailableNegative104132 - 107596131323.0
molybdopterin-guanine dinucleotide biosynthesis protein bCALNI_RS00550Not AvailableNegative107603 - 10825624492.5
is256 family transposaseCALNI_RS00555Not AvailablePositive108454 - 10967146667.0
hypothetical proteinCALNI_RS11185Not AvailableNegative109689 - 10994910222.6

Displaying genes 161 – 170 of 2180 in total

Metabolites

1619 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm0001785(2R,3R)-tartrateC4H6O6Chemical structure of (2R,3R)-tartrate87-69-4
Average150.0868Da
Monoisotopic150.0164379Da
BASm0001808corynebactinC39H42N6O18Chemical structure of corynebactinNot available
Average882.789Da
Monoisotopic882.2555585Da

Displaying 1–10 of 1619 metabolites

Health Effects

No health effects information available for this bacterium.