Bacteroides clarus YIT 12056

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides clarus YIT 12056 is an obligate anaerobe, chemoheterotrophic bacterium that produces energy through fermentation, exhibits a Gram-negative stain, is typically rod-shaped, and can be found in the human gut and other body sites such as the oral cavity and feces.As a member of the Bacteroides genus, Bacteroides clarus plays a crucial role in the human microbiome, particularly in the intestinal tract where it aids in the digestion of complex carbohydrates. The obligate anaerobic nature of this microbe means that it thrives in environments devoid of oxygen, making it particularly well-suited for the anaerobic conditions of the gut. Its chemoheterotrophic metabolism indicates that it relies on organic compounds for energy and carbon, utilizing nutrients derived from dietary sources or other microorganisms within the gut ecosystem. The Gram-negative characteristic of Bacteroides clarus is highlighted by its outer membrane, which contains lipopolysaccharides that contribute to its pathogenic potential under certain circumstances. Its rod shape allows for efficient movement and colonization within the complex microhabitats of the gastrointestinal tract. Bacteroides clarus is notably significant in maintaining gut health, as it competes with pathogenic bacteria, helps synthesize essential vitamins, and contributes to the overall balance of the microbiome. Dysbiosis, or an imbalance in microbial populations, can lead to conditions such as obesity and inflammatory bowel disease, underscoring the importance of this microbe in metabolic health. Furthermore, its potential interactions with the immune system may provide insights into future therapeutic approaches for various diseases.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides clarus
StrainYIT 12056

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bacteroides clarus YIT 12056
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides clarus YIT 12056 B_clarusYIT12056-1.0_Cont174.1, whole

Gene Summary

Adenine Count

995587 bp

Thymine Count

1050938 bp

Guanine Count

876015 bp

Cytosine Count

824150 bp

Genome Length

3746690 bp

Protein-coding Genes

3272 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinHMPREF9445_01427Not AvailableNegative1512579 - 151386247306.2
putative membrane proteinHMPREF9445_01428Not AvailablePositive1514039 - 151471924981.5
protein exsbHMPREF9445_01429Not AvailablePositive1514812 - 151549225185.5
preq(1) synthaseHMPREF9445_01430Not AvailablePositive1515573 - 151602817696.3
tonb-dependent receptor plug domain proteinHMPREF9445_01431Not AvailablePositive1516264 - 151856185979.1
hypothetical proteinHMPREF9445_01432Not AvailablePositive1518614 - 152001450833.5
pepsy domain proteinHMPREF9445_01433Not AvailablePositive1520020 - 152117443143.4
cyclic nucleotide-binding domain proteinHMPREF9445_01434Not AvailableNegative1521601 - 152222423448.9
hydroxylamine reductaseHMPREF9445_01435Not AvailablePositive1522377 - 152404461458.3
kinase, pfkb familyHMPREF9445_01436Not AvailableNegative1524168 - 152504632242.9

Displaying genes 1431 – 1440 of 3333 in total

Metabolites

489 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da

Displaying 1–10 of 489 metabolites

Health Effects

No health effects information available for this bacterium.