Paraprevotella xylaniphila YIT 11841

Gram-negativeovoidAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Paraprevotella

Description

Paraprevotella xylaniphila YIT 11841 is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperature ranges, functioning as a chemoheterotroph and is classified as an obligate anaerobe. This microbe primarily inhabits the human gastrointestinal tract, where it plays a significant role in the digestion of dietary fiber and the metabolism of complex polysaccharides. As a Gram-negative organism, Paraprevotella xylaniphila possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature contributes to its resilience in anaerobic environments, particularly within the gut, where oxygen levels are significantly low. The rod shape of the bacterium facilitates its motility in viscous environments, aiding in its colonization and interaction with other gut microbes. Being a mesophilic bacterium, Paraprevotella xylaniphila thrives optimally at moderate temperatures, typically between 30°C to 37°C, corresponding with the body temperature of its host. As a chemoheterotroph, it derives energy from organic compounds, utilizing complex carbohydrates and proteins as substrates for growth and reproduction. The obligate anaerobic nature of this microbe indicates that it cannot survive in the presence of oxygen, relying on fermentation processes to generate energy. In the human gut, Paraprevotella xylaniphila contributes to the overall health of the microbiome by breaking down dietary fibers that humans cannot digest on their own. This fermentation results in the production of short-chain fatty acids, which are beneficial for gut health and may exert systemic anti-inflammatory effects. Furthermore, recent research has suggested that the presence of Paraprevotella xylaniphila may be associated with various health benefits, including improved metabolic functions and a healthier immune response, highlighting its potential importance in maintaining gut homeostasis and overall human health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusParaprevotella
SpeciesParaprevotella xylaniphila
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
Shapeovoid
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraprevotella xylaniphila YIT 11841

Accession NumberAFBR00000000.1

Gene Summary

Adenine Count

984693 bp

Thymine Count

966294 bp

Guanine Count

900540 bp

Cytosine Count

938264 bp

Genome Length

3789791 bp

Protein-coding Genes

3442 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinHMPREF9442_00001Not Available+1 - 2598893.48
16s ribosomal rnaNot AvailableNot Available+16 - 1532Not Available
hypothetical proteinHMPREF9442_00002Not Available+412 - 5374709.56
thiamine-phosphate diphosphorylaseHMPREF9442_00003Not Available+664 - 129623243.0
Ncrna_class:autocatalytically_spliced_intronNot AvailableNot Available+1014 - 1090Not Available
thiamine biosynthesis protein thicHMPREF9442_00004Not Available+1309 - 303665252.8
thiamine monophosphate synthase/teniHMPREF9442_00005Not Available+3236 - 384423185.9
ribose-phosphate diphosphokinaseHMPREF9442_00006Not Available+3905 - 482233243.3
antioxidant, ahpc/tsa familyHMPREF9442_00007Not Available+4920 - 601741534.0
alpha-glucan phosphorylaseHMPREF9442_00008Not Available-6114 - 867898147.5

Displaying genes 1 – 10 of 3505 in total

Pathways

155 pathways

Metabolites

496 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 496 metabolites