Nocardia amikacinitolerans

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Nocardia amikacinitolerans is a Gram-positive bacterium characterized by its ability to thrive optimally at a temperature of 25.0°C. This organism belongs to the genus Nocardia, which is known for its filamentous, branched morphology and distinctive cell wall structure, rich in mycolic acids. The Gram-positive nature of N. amikacinitolerans suggests the presence of a thick peptidoglycan layer, which is a hallmark of this group of bacteria. The ecological role of Nocardia species, including N. amikacinitolerans, is often linked to soil and organic matter, where they contribute to the degradation of complex organic compounds. Their metabolic versatility enables them to play a significant role in nutrient cycling within terrestrial ecosystems. Furthermore, the optimal growth temperature of 25.0°C aligns with typical environmental conditions found in soil habitats, potentially emphasizing the organism's adaptation to its ecological niche. Overall, Nocardia amikacinitolerans represents a significant component of the microbial community in soil environments, where it may influence both the decomposition processes and the overall health of the ecosystem. The study of this microbe could provide further insights into microbial interactions and functions within its natural habitat.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia amikacinitolerans
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardia amikacinitolerans strain DSM 45537 genome assembly,

Gene Summary

Adenine Count

1155594 bp

Thymine Count

1154748 bp

Guanine Count

2538273 bp

Cytosine Count

2528954 bp

Genome Length

7379133 bp

Protein-coding Genes

6416 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
predicted 2-oxoglutarate- and fe(ii)-dependent dioxygenase ybixSAMN04244553_6294Not AvailablePositive6738355 - 673971049968.7
oligopeptide transport system substrate-binding proteinSAMN04244553_6295Not AvailableNegative6739849 - 674144458054.9
l-ornithine n5-oxygenaseSAMN04244553_6296Not AvailablePositive6741647 - 674294248719.9
cupin domain-containing proteinSAMN04244553_6297Not AvailablePositive6742939 - 674333414737.2
methionyl-trna synthetaseSAMN04244553_6298Not AvailablePositive6743331 - 674487556226.4
glycine/d-amino acid oxidaseSAMN04244553_6299Not AvailablePositive6744877 - 674592036561.9
atp-grasp domain-containing proteinSAMN04244553_6300Not AvailablePositive6745937 - 674723545719.9
hypothetical proteinSAMN04244553_6301Not AvailablePositive6747232 - 674755511879.8
hypothetical proteinSAMN04244553_6302Not AvailablePositive6747552 - 674800115647.1
fad/fmn-containing dehydrogenaseSAMN04244553_6303Not AvailablePositive6747998 - 674937148443.9

Displaying genes 5931 – 5940 of 6524 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
KeratitisCausesPMC13340100
Nocardia amikacinitolerans keratitisCausesPMC8898206

Displaying health effects 1 – 2 of 2 in total