Nocardia amikacinitolerans

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Nocardia amikacinitolerans is a Gram-positive bacterium characterized by its ability to thrive optimally at a temperature of 25.0°C. This organism belongs to the genus Nocardia, which is known for its filamentous, branched morphology and distinctive cell wall structure, rich in mycolic acids. The Gram-positive nature of N. amikacinitolerans suggests the presence of a thick peptidoglycan layer, which is a hallmark of this group of bacteria. The ecological role of Nocardia species, including N. amikacinitolerans, is often linked to soil and organic matter, where they contribute to the degradation of complex organic compounds. Their metabolic versatility enables them to play a significant role in nutrient cycling within terrestrial ecosystems. Furthermore, the optimal growth temperature of 25.0°C aligns with typical environmental conditions found in soil habitats, potentially emphasizing the organism's adaptation to its ecological niche. Overall, Nocardia amikacinitolerans represents a significant component of the microbial community in soil environments, where it may influence both the decomposition processes and the overall health of the ecosystem. The study of this microbe could provide further insights into microbial interactions and functions within its natural habitat.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia amikacinitolerans
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardia amikacinitolerans strain DSM 45537 genome assembly,

Gene Summary

Adenine Count

1155594 bp

Thymine Count

1154748 bp

Guanine Count

2538273 bp

Cytosine Count

2528954 bp

Genome Length

7379133 bp

Protein-coding Genes

6416 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadh-fmn oxidoreductase rutf, flavin reductase (dim6/ntab) familySAMN04244553_5905Not AvailableNegative6332208 - 633275920087.8
cys-trna(pro) deacylase, prolyl-trna editing enzyme ybak/ebscSAMN04244553_5906Not AvailableNegative6332859 - 633336217843.6
enoyl-coa hydrataseSAMN04244553_5907Not AvailablePositive6333434 - 633425529344.2
dna-binding transcriptional regulator, marr familySAMN04244553_5908Not AvailablePositive6334335 - 633483218819.4
drug resistance transporter, emrb/qaca subfamilySAMN04244553_5909Not AvailablePositive6334829 - 633661362625.5
hypothetical proteinSAMN04244553_5910Not AvailablePositive6336908 - 63371508455.77
inorganic pyrophosphataseSAMN04244553_5911Not AvailableNegative6337309 - 633780018325.5
d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4)SAMN04244553_5912Not AvailablePositive6338031 - 633943747485.8
putative hydrolase/uncharacterized protein, coenzyme f420 biosynthesis associatedSAMN04244553_5913Not AvailablePositive6339451 - 634056640053.9
trna(ile)-lysidine synthaseSAMN04244553_5914Not AvailablePositive6341170 - 634217134505.2

Displaying genes 5551 – 5560 of 6524 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
KeratitisCausesPMC13340100
Nocardia amikacinitolerans keratitisCausesPMC8898206

Displaying health effects 1 – 2 of 2 in total