Nocardia amikacinitolerans

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Nocardia amikacinitolerans is a Gram-positive bacterium characterized by its ability to thrive optimally at a temperature of 25.0°C. This organism belongs to the genus Nocardia, which is known for its filamentous, branched morphology and distinctive cell wall structure, rich in mycolic acids. The Gram-positive nature of N. amikacinitolerans suggests the presence of a thick peptidoglycan layer, which is a hallmark of this group of bacteria. The ecological role of Nocardia species, including N. amikacinitolerans, is often linked to soil and organic matter, where they contribute to the degradation of complex organic compounds. Their metabolic versatility enables them to play a significant role in nutrient cycling within terrestrial ecosystems. Furthermore, the optimal growth temperature of 25.0°C aligns with typical environmental conditions found in soil habitats, potentially emphasizing the organism's adaptation to its ecological niche. Overall, Nocardia amikacinitolerans represents a significant component of the microbial community in soil environments, where it may influence both the decomposition processes and the overall health of the ecosystem. The study of this microbe could provide further insights into microbial interactions and functions within its natural habitat.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia amikacinitolerans
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardia amikacinitolerans strain DSM 45537 genome assembly,

Gene Summary

Adenine Count

1155594 bp

Thymine Count

1154748 bp

Guanine Count

2538273 bp

Cytosine Count

2528954 bp

Genome Length

7379133 bp

Protein-coding Genes

6416 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
prevent-host-death family proteinSAMN04244553_4420Not AvailableNegative4623983 - 46242409189.86
predicted transcriptional regulator ydee, contains arac-type dna-binding domainSAMN04244553_4421Not AvailableNegative4624284 - 462470915565.4
integron-associated effector binding proteinSAMN04244553_4422Not AvailableNegative4624720 - 462517816789.7
membrane carboxypeptidase (penicillin-binding protein)SAMN04244553_4423Not AvailableNegative4625478 - 462775180990.7
multiple sugar transport system permease proteinSAMN04244553_4424Not AvailableNegative4627941 - 462881031517.1
multiple sugar transport system permease proteinSAMN04244553_4425Not AvailableNegative4628855 - 462988937345.0
carbohydrate abc transporter substrate-binding protein, cut1 familySAMN04244553_4426Not AvailableNegative4629935 - 463123645871.9
protein of unknown functionSAMN04244553_4427Not AvailablePositive4631582 - 463239429019.4
putative metallohydrolase, tigr04338 familySAMN04244553_4428Not AvailablePositive4632652 - 463321820743.7
o-succinylbenzoate synthaseSAMN04244553_4429Not AvailableNegative4633703 - 463467434728.5

Displaying genes 4121 – 4130 of 6524 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
KeratitisCausesPMC13340100
Nocardia amikacinitolerans keratitisCausesPMC8898206

Displaying health effects 1 – 2 of 2 in total