Nocardia amikacinitolerans

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Nocardia amikacinitolerans is a Gram-positive bacterium characterized by its ability to thrive optimally at a temperature of 25.0°C. This organism belongs to the genus Nocardia, which is known for its filamentous, branched morphology and distinctive cell wall structure, rich in mycolic acids. The Gram-positive nature of N. amikacinitolerans suggests the presence of a thick peptidoglycan layer, which is a hallmark of this group of bacteria. The ecological role of Nocardia species, including N. amikacinitolerans, is often linked to soil and organic matter, where they contribute to the degradation of complex organic compounds. Their metabolic versatility enables them to play a significant role in nutrient cycling within terrestrial ecosystems. Furthermore, the optimal growth temperature of 25.0°C aligns with typical environmental conditions found in soil habitats, potentially emphasizing the organism's adaptation to its ecological niche. Overall, Nocardia amikacinitolerans represents a significant component of the microbial community in soil environments, where it may influence both the decomposition processes and the overall health of the ecosystem. The study of this microbe could provide further insights into microbial interactions and functions within its natural habitat.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia amikacinitolerans
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardia amikacinitolerans strain DSM 45537 genome assembly,

Gene Summary

Adenine Count

1155594 bp

Thymine Count

1154748 bp

Guanine Count

2538273 bp

Cytosine Count

2528954 bp

Genome Length

7379133 bp

Protein-coding Genes

6416 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
short-chain dehydrogenaseSAMN04244553_3642Not AvailablePositive3747811 - 374958364801.9
hypothetical proteinSAMN04244553_3643Not AvailableNegative3749576 - 375010319445.2
nadph2:quinone reductaseSAMN04244553_3644Not AvailablePositive3750601 - 375159633917.3
deazaflavin-dependent oxidoreductase, nitroreductase familySAMN04244553_3645Not AvailableNegative3751804 - 375223515973.3
Trna-metNot AvailableNot AvailablePositive3752411 - 3752487Not Available
hypothetical proteinSAMN04244553_3649Not AvailablePositive3754182 - 375497029484.9
excreted virulence factor espc, type vii esx didermSAMN04244553_3650Not AvailablePositive3754970 - 375528111156.3
hypothetical proteinSAMN04244553_3651Not AvailablePositive3755278 - 375616832106.9
hypothetical proteinSAMN04244553_3652Not AvailablePositive3756150 - 375671920372.1
pucr c-terminal helix-turn-helix domain-containing proteinSAMN04244553_3655Not AvailableNegative3758451 - 375973747194.1

Displaying genes 3361 – 3370 of 6524 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
KeratitisCausesPMC13340100
Nocardia amikacinitolerans keratitisCausesPMC8898206

Displaying health effects 1 – 2 of 2 in total