Nocardia amikacinitolerans

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Nocardia amikacinitolerans is a Gram-positive bacterium characterized by its ability to thrive optimally at a temperature of 25.0°C. This organism belongs to the genus Nocardia, which is known for its filamentous, branched morphology and distinctive cell wall structure, rich in mycolic acids. The Gram-positive nature of N. amikacinitolerans suggests the presence of a thick peptidoglycan layer, which is a hallmark of this group of bacteria. The ecological role of Nocardia species, including N. amikacinitolerans, is often linked to soil and organic matter, where they contribute to the degradation of complex organic compounds. Their metabolic versatility enables them to play a significant role in nutrient cycling within terrestrial ecosystems. Furthermore, the optimal growth temperature of 25.0°C aligns with typical environmental conditions found in soil habitats, potentially emphasizing the organism's adaptation to its ecological niche. Overall, Nocardia amikacinitolerans represents a significant component of the microbial community in soil environments, where it may influence both the decomposition processes and the overall health of the ecosystem. The study of this microbe could provide further insights into microbial interactions and functions within its natural habitat.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia amikacinitolerans
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardia amikacinitolerans strain DSM 45537 genome assembly,

Gene Summary

Adenine Count

1155594 bp

Thymine Count

1154748 bp

Guanine Count

2538273 bp

Cytosine Count

2528954 bp

Genome Length

7379133 bp

Protein-coding Genes

6416 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
virulence factor mce family proteinSAMN04244553_2715Not AvailableNegative2742012 - 274342748549.6
phospholipid/cholesterol/gamma-hch transport system permease proteinSAMN04244553_2716Not AvailableNegative2743437 - 274430030430.9
phospholipid/cholesterol/gamma-hch transport system permease proteinSAMN04244553_2717Not AvailableNegative2744302 - 274518330922.3
hypothetical proteinSAMN04244553_2718Not AvailableNegative2745613 - 27458016704.68
hypothetical proteinSAMN04244553_2719Not AvailableNegative2745801 - 27460258400.61
uncharacterized conserved protein, duf2236 familySAMN04244553_2720Not AvailablePositive2746341 - 274724934905.0
uncharacterized conserved protein yndb, ahsa1/start domainSAMN04244553_2721Not AvailablePositive2747259 - 274770516793.6
d-alanyl-d-alanine carboxypeptidaseSAMN04244553_2722Not AvailableNegative2747776 - 274890339218.7
transposase and inactivated derivatives, is30 familySAMN04244553_2723Not AvailablePositive2749450 - 275069145742.6
hypothetical proteinSAMN04244553_2724Not AvailableNegative2751453 - 27516417025.3

Displaying genes 2501 – 2510 of 6524 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
KeratitisCausesPMC13340100
Nocardia amikacinitolerans keratitisCausesPMC8898206

Displaying health effects 1 – 2 of 2 in total