Nocardia amikacinitolerans

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Nocardia amikacinitolerans is a Gram-positive bacterium characterized by its ability to thrive optimally at a temperature of 25.0°C. This organism belongs to the genus Nocardia, which is known for its filamentous, branched morphology and distinctive cell wall structure, rich in mycolic acids. The Gram-positive nature of N. amikacinitolerans suggests the presence of a thick peptidoglycan layer, which is a hallmark of this group of bacteria. The ecological role of Nocardia species, including N. amikacinitolerans, is often linked to soil and organic matter, where they contribute to the degradation of complex organic compounds. Their metabolic versatility enables them to play a significant role in nutrient cycling within terrestrial ecosystems. Furthermore, the optimal growth temperature of 25.0°C aligns with typical environmental conditions found in soil habitats, potentially emphasizing the organism's adaptation to its ecological niche. Overall, Nocardia amikacinitolerans represents a significant component of the microbial community in soil environments, where it may influence both the decomposition processes and the overall health of the ecosystem. The study of this microbe could provide further insights into microbial interactions and functions within its natural habitat.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia amikacinitolerans
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardia amikacinitolerans strain DSM 45537 genome assembly,

Gene Summary

Adenine Count

1155594 bp

Thymine Count

1154748 bp

Guanine Count

2538273 bp

Cytosine Count

2528954 bp

Genome Length

7379133 bp

Protein-coding Genes

6416 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-carboxy-cis,cis-muconate cycloisomerase/3-oxoadipate enol-lactonase,tigr02427SAMN04244553_1469Not AvailableNegative1334357 - 133656476277.9
protocatechuate 3,4-dioxygenase alpha subunitSAMN04244553_1470Not AvailableNegative1336557 - 133710219964.6
protocatechuate 3,4-dioxygenase beta subunitSAMN04244553_1471Not AvailableNegative1337095 - 133782327306.9
glutaconate coa-transferase subunit bSAMN04244553_1472Not AvailableNegative1337823 - 133857525917.1
glutaconate coa-transferase subunit aSAMN04244553_1473Not AvailableNegative1338572 - 133938729301.0
p-hydroxybenzoate 3-monooxygenaseSAMN04244553_1474Not AvailableNegative1339380 - 134055543085.0
lysophospholipase, alpha-beta hydrolase superfamilySAMN04244553_1475Not AvailablePositive1340720 - 134194342817.1
dna-binding transcriptional regulator, padr familySAMN04244553_1476Not AvailablePositive1342049 - 134264522670.1
protein of unknown functionSAMN04244553_1477Not AvailablePositive1342649 - 134312817180.0
hypothetical proteinSAMN04244553_1478Not AvailableNegative1343135 - 134414836410.1

Displaying genes 1291 – 1300 of 6524 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
KeratitisCausesPMC13340100
Nocardia amikacinitolerans keratitisCausesPMC8898206

Displaying health effects 1 – 2 of 2 in total