Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Nocardia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Nocardia |
| Species | Nocardia amikacinitolerans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1155594 bp
Thymine Count
1154748 bp
Guanine Count
2538273 bp
Cytosine Count
2528954 bp
Genome Length
7379133 bp
Protein-coding Genes
6416 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide/nickel transport system permease protein | SAMN04244553_1373 | Not Available | Negative | 1212666 - 1213664 | 35092.4 |
| oligopeptide/dipeptide abc transporter, atp-binding protein, c-terminal domain-containing protein | SAMN04244553_1374 | Not Available | Negative | 1213711 - 1216422 | 94640.9 |
| peptide/nickel transport system substrate-binding protein | SAMN04244553_1375 | Not Available | Negative | 1216419 - 1218074 | 59199.5 |
| isopenicillin n synthase | SAMN04244553_1376 | Not Available | Positive | 1218416 - 1219582 | 43618.4 |
| hypothetical protein | SAMN04244553_1377 | Not Available | Positive | 1219603 - 1220136 | 20664.1 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04244553_1378 | Not Available | Negative | 1220072 - 1221358 | 45623.9 |
| phytanoyl-coa dioxygenase (phyh) | SAMN04244553_1379 | Not Available | Negative | 1221351 - 1222235 | 33271.4 |
| phytanoyl-coa dioxygenase (phyh) | SAMN04244553_1380 | Not Available | Negative | 1222285 - 1223172 | 33646.7 |
| pentalenene oxygenase | SAMN04244553_1381 | Not Available | Negative | 1223230 - 1224579 | 49813.1 |
| snoal-like polyketide cyclase | SAMN04244553_1382 | Not Available | Negative | 1224576 - 1225031 | 16253.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Keratitis | Causes | PMC13340100 |
| Nocardia amikacinitolerans keratitis | Causes | PMC8898206 |

