Rubinisphaera brasiliensis DSM 5305

CocciMotileAerobic

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Planctomycetia

Order

Planctomycetales

Family

Planctomycetaceae

Genus

Rubinisphaera

Description

Rubinisphaera brasiliensis DSM 5305 is a thermophilic, chemolithoautotrophic microorganism that thrives in environments with temperatures above 50°C. As a phototroph, this microbe harnesses energy from light, producing ATP through photosynthesis. The energy production process involves the oxidation of reduced sulfur compounds, such as hydrogen sulfide, which is a unique characteristic of chemolithoautotrophic organisms. This microbe is gram-negative, and its shape is typically rod-like, with dimensions ranging from 0.5-1.5 μm in length and 0.1-0.3 μm in width. The cells of Rubinisphaera brasiliensis are commonly found in various environments, including soil, sediment, and aquatic ecosystems. The microbe's ability to thrive in a wide range of environments is likely due to its tolerance to varying levels of oxygen. Specifically, it is an aerotolerant anaerobe, meaning it can survive in both aerobic and anaerobic conditions. One of the defining characteristics of Rubinisphaera brasiliensis is its ability to oxidize reduced sulfur compounds, such as hydrogen sulfide, to produce energy. This process is essential for its survival in environments where these compounds are present. Additionally, its thermophilic nature allows it to thrive in environments with high temperatures, which is advantageous for its survival in hot environments. Rubinisphaera brasiliensis DSM 5305 is a valuable research subject, providing insights into the evolution of chemolithoautotrophic metabolism and the adaptation of microorganisms to high-temperature environments. Its unique characteristics make it an ideal model organism for studying the metabolic pathways and ecological roles of thermophilic microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusRubinisphaera
SpeciesRubinisphaera brasiliensis
StrainDSM 5305

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatFresh water-Marine
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Rubinisphaera brasiliensis DSM 5305, complete sequence.

Gene Summary

Adenine Count

1305831 bp

Thymine Count

1310126 bp

Guanine Count

1688094 bp

Cytosine Count

1702551 bp

Genome Length

6006602 bp

Protein-coding Genes

4642 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-binding proteinPLABR_RS24300Not AvailablePositive529038 - 52990732811.1
endonuclease/exonuclease/phosphatase family proteinPLABR_RS02275Not AvailableNegative530055 - 53115841687.9
mate family efflux transporterPLABR_RS02280Not AvailableNegative531531 - 53297953469.9
ribosome silencing factorPLABR_RS02285Not AvailableNegative533282 - 53378518571.7
prolyl oligopeptidase family serine peptidasePLABR_RS02290Not AvailablePositive534021 - 53616280762.5
mota/tolq/exbb proton channel family proteinPLABR_RS02295Not AvailablePositive536192 - 53684523843.9
tetratricopeptide repeat proteinPLABR_RS02300Not AvailablePositive537093 - 540734136140.0
tetratricopeptide repeat proteinPLABR_RS02305Not AvailablePositive540812 - 54186738468.5
mota/tolq/exbb proton channel family proteinPLABR_RS02310Not AvailablePositive542135 - 54299230472.0
exbd/tolr family proteinPLABR_RS02315Not AvailablePositive543097 - 54357318001.7

Displaying genes 461 – 470 of 4707 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0004531(6S)-NADHXC21H29N7O15P2Chemical structure of (6S)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004532(6R)-NADHXC21H29N7O15P2Chemical structure of (6R)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004533(6S)-NADPHXC21H28N7O18P3Chemical structure of (6S)-NADPHXNot available
Average759.409Da
Monoisotopic759.0725624Da
BASm0004534(6R)-NADPHXC21H28N7O18P3Chemical structure of (6R)-NADPHXNot available
Average759.409Da
Monoisotopic759.072562403Da

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.