Rubinisphaera brasiliensis DSM 5305

CocciMotileAerobic

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Planctomycetia

Order

Planctomycetales

Family

Planctomycetaceae

Genus

Rubinisphaera

Description

Rubinisphaera brasiliensis DSM 5305 is a thermophilic, chemolithoautotrophic microorganism that thrives in environments with temperatures above 50°C. As a phototroph, this microbe harnesses energy from light, producing ATP through photosynthesis. The energy production process involves the oxidation of reduced sulfur compounds, such as hydrogen sulfide, which is a unique characteristic of chemolithoautotrophic organisms. This microbe is gram-negative, and its shape is typically rod-like, with dimensions ranging from 0.5-1.5 μm in length and 0.1-0.3 μm in width. The cells of Rubinisphaera brasiliensis are commonly found in various environments, including soil, sediment, and aquatic ecosystems. The microbe's ability to thrive in a wide range of environments is likely due to its tolerance to varying levels of oxygen. Specifically, it is an aerotolerant anaerobe, meaning it can survive in both aerobic and anaerobic conditions. One of the defining characteristics of Rubinisphaera brasiliensis is its ability to oxidize reduced sulfur compounds, such as hydrogen sulfide, to produce energy. This process is essential for its survival in environments where these compounds are present. Additionally, its thermophilic nature allows it to thrive in environments with high temperatures, which is advantageous for its survival in hot environments. Rubinisphaera brasiliensis DSM 5305 is a valuable research subject, providing insights into the evolution of chemolithoautotrophic metabolism and the adaptation of microorganisms to high-temperature environments. Its unique characteristics make it an ideal model organism for studying the metabolic pathways and ecological roles of thermophilic microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusRubinisphaera
SpeciesRubinisphaera brasiliensis
StrainDSM 5305

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatFresh water-Marine
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Rubinisphaera brasiliensis DSM 5305, complete sequence.

Gene Summary

Adenine Count

1305831 bp

Thymine Count

1310126 bp

Guanine Count

1688094 bp

Cytosine Count

1702551 bp

Genome Length

6006602 bp

Protein-coding Genes

4642 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phytanoyl-coa dioxygenase family proteinPLABR_RS15285Not AvailableNegative3672744 - 367348127862.8
glycoside hydrolase family 16 proteinPLABR_RS15290Not AvailableNegative3673659 - 367473240007.8
fn3 domain-containing metallophosphoesterase family proteinPLABR_RS15295Not AvailableNegative3674879 - 367604244381.0
sodium:solute symporter family proteinPLABR_RS15305Not AvailablePositive3676398 - 367784651433.0
putative monovalent cation/h+ antiporter subunit aPLABR_RS15310Not AvailablePositive3678347 - 368077085923.5
na+/h+ antiporter subunit bPLABR_RS15315Not AvailablePositive3680770 - 368118314581.2
na+/h+ antiporter subunit cPLABR_RS15320Not AvailablePositive3681189 - 368153612177.4
na+/h+ antiporter subunit dPLABR_RS15325Not AvailablePositive3681533 - 368316458760.3
na+/h+ antiporter subunit ePLABR_RS15330Not AvailablePositive3683161 - 368363417926.4
monovalent cation/h+ antiporter complex subunit fPLABR_RS15335Not AvailablePositive3683631 - 368396011715.8

Displaying genes 2961 – 2970 of 4707 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0004531(6S)-NADHXC21H29N7O15P2Chemical structure of (6S)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004532(6R)-NADHXC21H29N7O15P2Chemical structure of (6R)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004533(6S)-NADPHXC21H28N7O18P3Chemical structure of (6S)-NADPHXNot available
Average759.409Da
Monoisotopic759.0725624Da
BASm0004534(6R)-NADPHXC21H28N7O18P3Chemical structure of (6R)-NADPHXNot available
Average759.409Da
Monoisotopic759.072562403Da

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.