Photobacterium aphoticum

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium aphoticum
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium aphoticum DNA, contig: contig00056, strain: JCM

Gene Summary

Adenine Count

1355547 bp

Thymine Count

1364935 bp

Guanine Count

1392623 bp

Cytosine Count

1299193 bp

Genome Length

5412298 bp

Protein-coding Genes

6938 genes

Non-Coding Genes

106 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i secretion system atpaseJCM19237_4037Not AvailableNegative5230385 - 52306248921.81
abc transporter transmembrane regionJCM19237_4038Not AvailableNegative5230617 - 523234164219.6
hypothetical proteinJCM19237_4039Not AvailablePositive5232342 - 52324643950.61
membrane bound c-di-gmp receptor lapdJCM19237_4040Not AvailableNegative5232505 - 523296617255.6
membrane bound c-di-gmp receptor lapdJCM19237_4041Not AvailableNegative5232963 - 523443254660.8
t1ss associated transglutaminase-like cysteine proteinase lappJCM19237_4042Not AvailableNegative5234438 - 523511525711.8
t1ss peptidoglycan-associated lipoprotein laplJCM19237_4043Not AvailableNegative5235122 - 523571821516.6
agglutination proteinJCM19237_4044Not AvailableNegative5235745 - 523616716271.4
type i secretion system outer membrane component lapeJCM19237_4045Not AvailableNegative5236203 - 523705431517.4
type i secretion system membrane fusion protein lapcJCM19237_4046Not AvailableNegative5237059 - 523752316699.2

Displaying genes 6811 – 6820 of 11511 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.