Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium aphoticum |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1355547 bp
Thymine Count
1364935 bp
Guanine Count
1392623 bp
Cytosine Count
1299193 bp
Genome Length
5412298 bp
Protein-coding Genes
6938 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine 13 synthase | JCM19237_4485 | Not Available | Positive | 4792808 - 4793671 | 32125.0 |
| trna pseudouridine 13 synthase | JCM19237_4486 | Not Available | Positive | 4793665 - 4793880 | 8256.8 |
| 5-nucleotidase sure | JCM19237_4487 | Not Available | Positive | 4793861 - 4794415 | 19913.8 |
| 5-nucleotidase sure | JCM19237_4488 | Not Available | Positive | 4794409 - 4794609 | 7162.4 |
| protein-l-isoaspartate o-methyltransferase | JCM19237_4489 | Not Available | Positive | 4794612 - 4795244 | 23345.3 |
| lipoprotein nlpd | JCM19237_4490 | Not Available | Positive | 4795245 - 4796210 | 35420.4 |
| rna polymerase sigma factor rpos | JCM19237_4491 | Not Available | Positive | 4796267 - 4796665 | 14807.4 |
| rna polymerase sigma factor rpos | JCM19237_4492 | Not Available | Positive | 4796730 - 4797206 | 17879.3 |
| hypothetical protein | JCM19237_4493 | Not Available | Positive | 4797280 - 4797405 | 4915.93 |
| dna mismatch repair protein muts | JCM19237_4494 | Not Available | Negative | 4797388 - 4798581 | 43669.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
