Photobacterium aphoticum

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium aphoticum
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium aphoticum DNA, contig: contig00056, strain: JCM

Gene Summary

Adenine Count

1355547 bp

Thymine Count

1364935 bp

Guanine Count

1392623 bp

Cytosine Count

1299193 bp

Genome Length

5412298 bp

Protein-coding Genes

6938 genes

Non-Coding Genes

106 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl- meso-diaminopimelate ligaseJCM19237_2945Not AvailablePositive3822862 - 382316110901.0
udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl- meso-diaminopimelate ligaseJCM19237_2946Not AvailablePositive3823164 - 382398229328.9
3-polyprenyl-4-hydroxybenzoate carboxy-lyase ubixJCM19237_2947Not AvailablePositive3823972 - 382461623000.0
universal stress protein family 3JCM19237_2948Not AvailableNegative3824697 - 382515817051.5
trap-type uncharacterized transport system fused permease componentJCM19237_2949Not AvailableNegative3825343 - 38255588127.94
trap-type uncharacterized transport system fused permease componentJCM19237_2950Not AvailableNegative3825558 - 382610020212.8
trap-type uncharacterized transport system fused permease componentJCM19237_2951Not AvailableNegative3826118 - 382702031879.2
trap-type uncharacterized transport system fused permease componentJCM19237_2952Not AvailableNegative3826999 - 382781128997.8
trap transporter solute receptor taxi family precursorJCM19237_2953Not AvailableNegative3828025 - 382906237139.2
arginine pathway regulatory protein argrJCM19237_2954Not AvailableNegative3829326 - 382979617006.6

Displaying genes 4981 – 4990 of 11511 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Average massMonoisotopic mass
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Health Effects

No health effects information available for this bacterium.