Treponema phagedenis F0421

Gram-negativeSpirilla

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Spirochaetales

Family

Treponemataceae

Genus

Treponema

Description

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema phagedenis
StrainF0421

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Treponema phagedenis F0421
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Treponema phagedenis F0421 T_phagedenis-1.0_Cont3714.3, whole

Gene Summary

Adenine Count

845641 bp

Thymine Count

847850 bp

Guanine Count

564459 bp

Cytosine Count

569947 bp

Genome Length

2827897 bp

Protein-coding Genes

3146 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-binding protein, ybab/ebfc familyHMPREF9554_00888A3DHB8Positive793488 - 79380511412.0
recombination protein recrHMPREF9554_00889Q73MF9Positive793805 - 79439821429.1
phosphoribosyl transferase domain proteinHMPREF9554_00890Not AvailableNegative794471 - 79507923597.5
hypothetical proteinHMPREF9554_00891Not AvailableNegative795131 - 79540310806.4
phosphoribosylaminoimidazolesuccinocarboxamide synthaseHMPREF9554_00892Q895U7Positive795677 - 79636325359.5
phosphoribosylformylglycinamidine synthaseHMPREF9554_00893Q6KZR2Positive796390 - 800043134608.0
phosphoribosylaminoimidazole carboxylase, catalytic subunitHMPREF9554_00894Q9WYS7Positive800115 - 80068420418.2
amidophosphoribosyltransferaseHMPREF9554_00895O26742Positive800681 - 80196447157.6
hypothetical proteinHMPREF9554_00896Not AvailablePositive801968 - 8021205743.07
hypothetical proteinHMPREF9554_00897Not AvailableNegative802474 - 8025995037.24

Displaying genes 891 – 900 of 3197 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

99 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001330N-acetyl-D-hexosamineC8H15NO6Chemical structure of N-acetyl-D-hexosamineNot available
Average221.209Da
Monoisotopic221.089937207Da

Displaying 1–10 of 99 metabolites

Health Effects

No health effects information available for this bacterium.