Kingdom
Pseudomonadati
Phylum
Spirochaetota
Class
Spirochaetia
Order
Spirochaetales
Family
Treponemataceae
Genus
Treponema
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Spirochaetota |
| Class | Spirochaetia |
| Order | Spirochaetales |
| Family | Treponemataceae |
| Genus | Treponema |
| Species | Treponema phagedenis |
| Strain | F0421 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Spirilla |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845641 bp
Thymine Count
847850 bp
Guanine Count
564459 bp
Cytosine Count
569947 bp
Genome Length
2827897 bp
Protein-coding Genes
3146 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp endopeptidase, proteolytic subunit clpp | HMPREF9554_00156 | Q73M38 | Negative | 142028 - 142639 | 22439.1 |
| trigger factor | HMPREF9554_00157 | Q73M39 | Negative | 142632 - 144023 | 53513.3 |
| Trna-gly | Not Available | Not Available | Positive | 144144 - 144215 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 144252 - 144331 | Not Available |
| Trna-lys | Not Available | Not Available | Positive | 144402 - 144474 | Not Available |
| cyclic nucleotide-binding domain protein | HMPREF9554_00161 | Not Available | Negative | 144542 - 145117 | 21604.3 |
| hypothetical protein | HMPREF9554_00162 | Not Available | Negative | 145299 - 145988 | 26631.3 |
| peptidase, s54 family | HMPREF9554_00163 | Not Available | Negative | 145996 - 146622 | 24081.5 |
| diguanylate cyclase (ggdef) domain protein | HMPREF9554_00164 | Q73RG3 | Negative | 146650 - 147750 | 42075.7 |
| hypothetical protein | HMPREF9554_00165 | Not Available | Negative | 147775 - 149388 | 62333.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
