Escherichia coli MS 117-3

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli MS 117-3 is a Gram-negative, rod-shaped bacterium characterized by its presence in pairs or as singles. This strain thrives optimally at a temperature of 37.0 °C, which aligns with the typical human body temperature, suggesting a close association with warm-blooded hosts. E. coli MS 117-3 is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, a trait that facilitates its survival in diverse environments within host organisms. This strain is noted to be host-associated, which emphasizes its potential role in the microbiota of various hosts, including humans and other mammals. The adaptability of E. coli MS 117-3 to different oxygen levels may confer an advantage in fluctuating environments within the host, where oxygen availability can vary significantly. Overall, the traits of E. coli MS 117-3 reflect its ecological versatility and potential significance in host-associated microbial communities, where it may contribute to metabolic processes and nutrient cycling.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainMS 117-3

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli MS 117-3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli MS 117-3 E_coli117-3-1.0_Cont2331.5, whole genome

Gene Summary

Adenine Count

1243201 bp

Thymine Count

1236986 bp

Guanine Count

1252749 bp

Cytosine Count

1280904 bp

Genome Length

5013840 bp

Protein-coding Genes

5250 genes

Non-Coding Genes

244 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion protein, vc_a0111 familyHMPREF9542_00606Not AvailablePositive540290 - 54137840566.4
type vi secretion system fha domain proteinHMPREF9542_00607Not AvailablePositive541382 - 54268348246.9
type vi secretion lipoprotein, vc_a0113 familyHMPREF9542_00608Not AvailablePositive542680 - 54320419468.1
type vi secretion protein, vc_a0114 familyHMPREF9542_00609Not AvailablePositive543207 - 54453849910.7
type iv / vi secretion system protein, dotu familyHMPREF9542_00610Not AvailablePositive544543 - 54530429376.7
atpase, aaa familyHMPREF9542_00611Not AvailablePositive545313 - 54691158527.1
atpase family associated with various cellular activities (aaa)HMPREF9542_00612Not AvailablePositive546912 - 54812544025.5
type vi secretion-associated protein, vc_a0118 familyHMPREF9542_00613Not AvailablePositive548122 - 54886526442.7
type vi secretion-associated protein, vc_a0119 familyHMPREF9542_00614Not AvailablePositive548840 - 55028253461.5
type vi secretion protein icmfHMPREF9542_00615Not AvailablePositive550361 - 553825132049.0

Displaying genes 781 – 790 of 5494 in total

Metabolites

4785 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.