Escherichia coli MS 117-3

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli MS 117-3 is a Gram-negative, rod-shaped bacterium characterized by its presence in pairs or as singles. This strain thrives optimally at a temperature of 37.0 °C, which aligns with the typical human body temperature, suggesting a close association with warm-blooded hosts. E. coli MS 117-3 is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, a trait that facilitates its survival in diverse environments within host organisms. This strain is noted to be host-associated, which emphasizes its potential role in the microbiota of various hosts, including humans and other mammals. The adaptability of E. coli MS 117-3 to different oxygen levels may confer an advantage in fluctuating environments within the host, where oxygen availability can vary significantly. Overall, the traits of E. coli MS 117-3 reflect its ecological versatility and potential significance in host-associated microbial communities, where it may contribute to metabolic processes and nutrient cycling.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainMS 117-3

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli MS 117-3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli MS 117-3 E_coli117-3-1.0_Cont2331.5, whole genome

Gene Summary

Adenine Count

1243201 bp

Thymine Count

1236986 bp

Guanine Count

1252749 bp

Cytosine Count

1280904 bp

Genome Length

5013840 bp

Protein-coding Genes

5250 genes

Non-Coding Genes

244 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yigz family proteinHMPREF9542_05138Not AvailableNegative4681796 - 468241021708.1
xaa-pro dipeptidaseHMPREF9542_05139Not AvailableNegative4682410 - 468374150185.9
fatty oxidation complex, alpha subunit fadbHMPREF9542_05140Not AvailablePositive4683805 - 468612084686.6
acetyl-coa c-acyltransferase fadaHMPREF9542_05141Not AvailablePositive4686130 - 468729340812.6
nad(p)h-flavin reductaseHMPREF9542_05142Not AvailableNegative4687546 - 468824726243.5
ubid family decarboxylaseHMPREF9542_05143Not AvailableNegative4688293 - 468978655606.8
transcriptional activator rfahHMPREF9542_05144Not AvailablePositive4689953 - 469044118341.3
hydrolase, tatd familyHMPREF9542_05145Not AvailableNegative4690438 - 469124029881.7
twin arginine-targeting protein translocase tatcHMPREF9542_05146Not AvailableNegative4691254 - 469203028877.9
twin arginine-targeting protein translocase tatbHMPREF9542_05147Not AvailableNegative4692033 - 469254818447.9

Displaying genes 5141 – 5150 of 5494 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.