Escherichia coli MS 21-1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli MS 21-1 is a gram-negative, rod-shaped bacterium that thrives in moderate temperatures, classifying it as a mesophile. This microbe is a chemoheterotroph, utilizing organic compounds for growth and deriving energy from chemical processes, making it reliant on organic substances in its environment. E. coli MS 21-1 is versatile and can be found in a variety of body sites across different species, primarily inhabiting the intestines of warm-blooded organisms, including humans, where it plays a crucial role in digestion and nutrient absorption. As a gram-negative organism, E. coli MS 21-1 possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which contributes to its pathogenic potential. The rod-shaped morphology allows for swift motility, aided by flagella that enhance its ability to navigate through viscous environments such as intestinal mucus. In terms of oxygen requirements, E. coli MS 21-1 is classified as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen. This adaptability is key to its survival in various ecological niches, enabling it to thrive in both aerobic and anaerobic conditions. Beyond its role in the gut microbiome, E. coli MS 21-1 has garnered attention in biotechnological applications for its ability to produce valuable metabolites, including biofuels and various biopolymers. Research continues to explore its potential in synthetic biology, leveraging its metabolic pathways to devise innovative solutions in environmental management and health sciences. The versatility and resilience of E. coli MS 21-1 exemplify the complex interactions within microbial ecosystems and highlight its significance in both ecological and industrial contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainMS 21-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli MS 21-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli MS 21-1 E_coli21-1-1.0_Cont1081.5, whole genome

Gene Summary

Adenine Count

1312869 bp

Thymine Count

1307888 bp

Guanine Count

1332865 bp

Cytosine Count

1329301 bp

Genome Length

5282923 bp

Protein-coding Genes

5579 genes

Non-Coding Genes

241 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transporter gate domain proteinHMPREF9530_03151P0AEI0Positive2799288 - 279974916194.5
beta-aspartyl peptidaseHMPREF9530_03152P39377Positive2799762 - 280093441059.3
lysr substrate binding domain proteinHMPREF9530_03153P39376Positive2800999 - 280191034712.6
putative anti-adapter protein iradHMPREF9530_03154A7ZVM4Negative2801903 - 28021549740.49
hypothetical proteinHMPREF9530_03155Not AvailableNegative2802261 - 28024045302.52
hypothetical proteinHMPREF9530_03156P0DPC5Negative2802491 - 28026345421.33
hypothetical proteinHMPREF9530_03157P39374Positive2802877 - 280379734180.3
fcd domain proteinHMPREF9530_03158P39161Negative2803938 - 280471129291.8
mannitol dehydrogenase domain proteinHMPREF9530_03159P39160Negative2804925 - 280638553673.3
mannonate dehydrataseHMPREF9530_03160B7UQW0Negative2806466 - 280765044796.5

Displaying genes 3181 – 3190 of 5820 in total

Metabolites

4788 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4788 metabolites

Health Effects

No health effects information available for this bacterium.