Gemmiger formicilis

RodNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Gemmiger

Description

Gemmiger formicilis is a nonsporulating, anaerobic, butyrate-producing bacterium that plays a significant role in the intestinal microflora of animals, particularly in the gastrointestinal tracts of humans and other mammals. As a chemoheterotroph, it derives energy from organic compounds, utilizing a diverse range of substrates found within the complex environment of the gut. This metabolic capability allows G. formicilis to contribute to the fermentation processes that are essential for nutrient absorption and energy production in the host. The production of butyrate by Gemmiger formicilis is particularly noteworthy, as butyrate serves as a critical short-chain fatty acid that provides energy to colonocytes, the cells lining the colon, and supports gut health by maintaining the integrity of the gut barrier. Additionally, butyrate exhibits anti-inflammatory properties and plays a role in modulating immune responses, thus contributing to the overall well-being of the host. G. formicilis exemplifies the intricate balance of microbial communities within the gut ecosystem, highlighting its essential function in maintaining host health. Its presence can influence the host's metabolism, immune system, and even behavior, showcasing the profound impact that gut microbiota have on overall physiology. Understanding the role and functions of such microbes can provide insights into the development of therapeutic strategies for gut-related diseases and conditions, emphasizing the interconnectedness of microbial health and host well-being.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusGemmiger
SpeciesGemmiger formicilis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatAnimal Intestinal Microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Gemmiger formicilis strain ATCC 27749 genome assembly, contig:

Gene Summary

Adenine Count

686306 bp

Thymine Count

672387 bp

Guanine Count

944166 bp

Cytosine Count

938690 bp

Genome Length

3241569 bp

Protein-coding Genes

2857 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sgnh hydrolase-like domain-containing protein, acetyltransferase algxSAMN02745178_00080Not AvailablePositive85291 - 8635239551.9
dna-binding transcriptional regulator, xre-family hth domainSAMN02745178_00081Not AvailablePositive86502 - 8686413433.4
transcriptional regulator, iclr familySAMN02745178_00082Not AvailableNegative87275 - 8803627724.4
2-dehydro-3-deoxyphosphogluconate aldolase / (4s)-4-hydroxy-2-oxoglutarate aldolaseSAMN02745178_00083Not AvailablePositive88330 - 8929234109.6
2-dehydro-3-deoxygluconokinaseSAMN02745178_00084Not AvailablePositive89389 - 9041437177.6
bira family transcriptional regulator, biotin operon repressor / biotin-[acetyl-coa-carboxylase] ligaseSAMN02745178_00085Not AvailablePositive90616 - 9159634436.6
biotin transport system substrate-specific componentSAMN02745178_00086Not AvailablePositive91615 - 9216018978.2
putative holliday junction resolvaseSAMN02745178_00087Not AvailablePositive92447 - 9290516393.3
undecaprenyl diphosphate synthaseSAMN02745178_00088Not AvailablePositive92920 - 9364527737.1
peptidyl-prolyl cis-trans isomerase b (cyclophilin b)SAMN02745178_00089Not AvailableNegative93900 - 9467627077.1

Displaying genes 81 – 90 of 2918 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.