Gemmiger formicilis

RodNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Gemmiger

Description

Gemmiger formicilis is a nonsporulating, anaerobic, butyrate-producing bacterium that plays a significant role in the intestinal microflora of animals, particularly in the gastrointestinal tracts of humans and other mammals. As a chemoheterotroph, it derives energy from organic compounds, utilizing a diverse range of substrates found within the complex environment of the gut. This metabolic capability allows G. formicilis to contribute to the fermentation processes that are essential for nutrient absorption and energy production in the host. The production of butyrate by Gemmiger formicilis is particularly noteworthy, as butyrate serves as a critical short-chain fatty acid that provides energy to colonocytes, the cells lining the colon, and supports gut health by maintaining the integrity of the gut barrier. Additionally, butyrate exhibits anti-inflammatory properties and plays a role in modulating immune responses, thus contributing to the overall well-being of the host. G. formicilis exemplifies the intricate balance of microbial communities within the gut ecosystem, highlighting its essential function in maintaining host health. Its presence can influence the host's metabolism, immune system, and even behavior, showcasing the profound impact that gut microbiota have on overall physiology. Understanding the role and functions of such microbes can provide insights into the development of therapeutic strategies for gut-related diseases and conditions, emphasizing the interconnectedness of microbial health and host well-being.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusGemmiger
SpeciesGemmiger formicilis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatAnimal Intestinal Microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Gemmiger formicilis strain ATCC 27749 genome assembly, contig:

Gene Summary

Adenine Count

686306 bp

Thymine Count

672387 bp

Guanine Count

944166 bp

Cytosine Count

938690 bp

Genome Length

3241569 bp

Protein-coding Genes

2857 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
stage iii sporulation protein agSAMN02745178_00813Not AvailablePositive883956 - 88448617820.2
stage iii sporulation protein ahSAMN02745178_00814Not AvailablePositive884500 - 88515623438.7
uncharacterized conserved protein ylou, alkaline shock protein (asp23) familySAMN02745178_00815Not AvailablePositive885255 - 88561412544.3
nusb antitermination factorSAMN02745178_00816Not AvailablePositive885645 - 88605815079.8
n6-l-threonylcarbamoyladenine synthaseSAMN02745178_00817Not AvailablePositive886052 - 88699933220.1
exodeoxyribonuclease vii large subunitSAMN02745178_00818Not AvailablePositive886978 - 88819544796.8
exodeoxyribonuclease vii small subunitSAMN02745178_00819Not AvailablePositive888202 - 8884238010.44
geranylgeranyl diphosphate synthase, type iiSAMN02745178_00820Not AvailablePositive888413 - 88930631983.1
hypothetical proteinSAMN02745178_00821Not AvailablePositive889319 - 88978616923.3
1-deoxy-d-xylulose-5-phosphate synthaseSAMN02745178_00822Not AvailablePositive889802 - 89167968303.1

Displaying genes 811 – 820 of 2918 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.