Gemmiger formicilis

RodNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Gemmiger

Description

Gemmiger formicilis is a nonsporulating, anaerobic, butyrate-producing bacterium that plays a significant role in the intestinal microflora of animals, particularly in the gastrointestinal tracts of humans and other mammals. As a chemoheterotroph, it derives energy from organic compounds, utilizing a diverse range of substrates found within the complex environment of the gut. This metabolic capability allows G. formicilis to contribute to the fermentation processes that are essential for nutrient absorption and energy production in the host. The production of butyrate by Gemmiger formicilis is particularly noteworthy, as butyrate serves as a critical short-chain fatty acid that provides energy to colonocytes, the cells lining the colon, and supports gut health by maintaining the integrity of the gut barrier. Additionally, butyrate exhibits anti-inflammatory properties and plays a role in modulating immune responses, thus contributing to the overall well-being of the host. G. formicilis exemplifies the intricate balance of microbial communities within the gut ecosystem, highlighting its essential function in maintaining host health. Its presence can influence the host's metabolism, immune system, and even behavior, showcasing the profound impact that gut microbiota have on overall physiology. Understanding the role and functions of such microbes can provide insights into the development of therapeutic strategies for gut-related diseases and conditions, emphasizing the interconnectedness of microbial health and host well-being.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusGemmiger
SpeciesGemmiger formicilis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatAnimal Intestinal Microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Gemmiger formicilis strain ATCC 27749 genome assembly, contig:

Gene Summary

Adenine Count

686306 bp

Thymine Count

672387 bp

Guanine Count

944166 bp

Cytosine Count

938690 bp

Genome Length

3241569 bp

Protein-coding Genes

2857 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative lysine transport system permease proteinSAMN02745178_01734Not AvailableNegative1886862 - 188768630420.4
putative lysine transport system substrate-binding proteinSAMN02745178_01735Not AvailableNegative1887767 - 188869331824.0
carbon starvation proteinSAMN02745178_01736Not AvailableNegative1888872 - 189060261426.4
maltose alpha-d-glucosyltransferase/ alpha-amylaseSAMN02745178_01737Not AvailablePositive1890985 - 189255358697.1
nitroreductaseSAMN02745178_01738Not AvailableNegative1892630 - 189320520918.3
putative peptidoglycan binding domain-containing proteinSAMN02745178_01739Not AvailableNegative1893400 - 189408925436.0
peptidoglycan-binding (pgrp) domain of peptidoglycan hydrolases-containing proteinSAMN02745178_01740Not AvailableNegative1894093 - 189616574202.2
uncharacterized protein, upf0371 familySAMN02745178_01741Not AvailablePositive1896239 - 189772954936.0
dna-methyltransferase (dcm)SAMN02745178_01742Not AvailableNegative1898247 - 189866215218.0
hypothetical proteinSAMN02745178_01743Not AvailableNegative1898745 - 189914315442.0

Displaying genes 1721 – 1730 of 2918 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.