Gemmiger formicilis

RodNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Gemmiger

Description

Gemmiger formicilis is a nonsporulating, anaerobic, butyrate-producing bacterium that plays a significant role in the intestinal microflora of animals, particularly in the gastrointestinal tracts of humans and other mammals. As a chemoheterotroph, it derives energy from organic compounds, utilizing a diverse range of substrates found within the complex environment of the gut. This metabolic capability allows G. formicilis to contribute to the fermentation processes that are essential for nutrient absorption and energy production in the host. The production of butyrate by Gemmiger formicilis is particularly noteworthy, as butyrate serves as a critical short-chain fatty acid that provides energy to colonocytes, the cells lining the colon, and supports gut health by maintaining the integrity of the gut barrier. Additionally, butyrate exhibits anti-inflammatory properties and plays a role in modulating immune responses, thus contributing to the overall well-being of the host. G. formicilis exemplifies the intricate balance of microbial communities within the gut ecosystem, highlighting its essential function in maintaining host health. Its presence can influence the host's metabolism, immune system, and even behavior, showcasing the profound impact that gut microbiota have on overall physiology. Understanding the role and functions of such microbes can provide insights into the development of therapeutic strategies for gut-related diseases and conditions, emphasizing the interconnectedness of microbial health and host well-being.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusGemmiger
SpeciesGemmiger formicilis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatAnimal Intestinal Microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Gemmiger formicilis strain ATCC 27749 genome assembly, contig:

Gene Summary

Adenine Count

686306 bp

Thymine Count

672387 bp

Guanine Count

944166 bp

Cytosine Count

938690 bp

Genome Length

3241569 bp

Protein-coding Genes

2857 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna(adenine34) deaminaseSAMN02745178_01309Not AvailableNegative1414533 - 141499416769.4
caax protease self-immunitySAMN02745178_01310Not AvailableNegative1415004 - 141591531895.2
dna-binding transcriptional regulator, lysr familySAMN02745178_01311Not AvailablePositive1416177 - 141705531571.0
glutamate synthase (nadph/nadh) small chainSAMN02745178_01312Not AvailableNegative1417239 - 141851946562.6
predicted nucleotidyltransferaseSAMN02745178_01313Not AvailableNegative1418603 - 141976940469.0
acetate kinaseSAMN02745178_01314Not AvailablePositive1419945 - 142115344215.3
polyribonucleotide nucleotidyltransferaseSAMN02745178_01315Not AvailableNegative1421545 - 142370478959.4
small subunit ribosomal protein s15SAMN02745178_01316Not AvailableNegative1423947 - 142421910265.6
riboflavin kinase / fmn adenylyltransferaseSAMN02745178_01317Not AvailableNegative1424376 - 142531133349.8
trna pseudouridine55 synthaseSAMN02745178_01318Not AvailableNegative1425319 - 142621231819.1

Displaying genes 1301 – 1310 of 2918 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.