Bacteroides oleiciplenus YIT 12058

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides oleiciplenus YIT 12058 is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, is classified as a heterotroph, and is an obligate anaerobe, typically found in the gastrointestinal tracts of various mammals. This microbe is a member of the Bacteroidetes phylum, notable for its role in breaking down complex carbohydrates in the human gut as part of its symbiotic relationship with the host.Being Gram-negative, B. oleiciplenus possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which can play a role in immune evasion and interaction with host cells. Its rod-shaped morphology allows for efficient movement and colonization within the diverse environments of the gastrointestinal tract, where it contributes significantly to the digestion of fibrous plant materials and the production of short-chain fatty acids, vital for host health. Bacteroides oleiciplenus prefers a mesophilic environment, typically thriving within a temperature range of 30°C to 37°C, which aligns with the conditions found in the mammalian gut. As a heterotroph, it relies on organic compounds from its environment for energy and growth, primarily derived from the diet of the host. This bacterium is an obligate anaerobe, meaning it cannot survive in the presence of oxygen, which influences its metabolic pathways and adaptation strategies within the anaerobic environment of the intestines. Remarkably, Bacteroides oleiciplenus has been studied for its potential applications in biotechnology, particularly in fermentative processes, and its unique genetic makeup could reveal insights into the evolution of gut microbiota and their impact on health and disease. Additionally, the presence of this bacterium in the gut is associated with various metabolic processes that underscore its importance in maintaining a balanced microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides oleiciplenus
StrainYIT 12058

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatlower intestinal tract
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides oleiciplenus YIT 12058


Gene Summary

Adenine Count

2029615 bp

Thymine Count

1966618 bp

Guanine Count

1503109 bp

Cytosine Count

1571773 bp

Genome Length

7071115 bp

Protein-coding Genes

5530 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
23s ribosomal rnaNot AvailableNot Available+1 - 2517Not Available
hypothetical proteinHMPREF9447_00001Not Available-1 - 602178.62
hypothetical proteinHMPREF9447_00002Not Available-29 - 50818938.4
23s ribosomal rnaNot AvailableNot Available+767 - 3645Not Available
16s ribosomal rnaNot AvailableNot Available+869 - 2380Not Available
hypothetical proteinHMPREF9447_00003Not Available-612 - 121723287.1
hypothetical proteinHMPREF9447_00004Not Available-1456 - 187816017.4
5s ribosomal rnaNot AvailableNot Available+2611 - 2719Not Available
hypothetical proteinHMPREF9447_00005Not Available-2158 - 348049662.1
5s ribosomal rnaNot AvailableNot Available+3740 - 3848Not Available

Displaying genes 1 – 10 of 5606 in total

Metabolites

626 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 626 metabolites