Waddlia chondrophila WSU 86-1044

Gram-negativeNon-motile

Kingdom

Pseudomonadati

Phylum

Chlamydiota

Class

Chlamydiia

Order

Parachlamydiales

Family

Waddliaceae

Genus

Waddlia

Description

This obligatory intracellular bacteria is suspected to be an agent of miscarriage in humans and ruminants. Strain WSU 86-1044 was isolated in 1986 at the Washington Animal Disease Diagnostic Laboratory (hence the genus name) from tissues of a first-trimester aborted bovine foetus; it grows in macrophages as well as in Acanthamoeba castellanii. Unlike other Chlamydia sequenced to date 5% of the genome encodes repetitive sequences; other Chlamydia have almost no repetitive DNA. It encodes a number of virulence factors specific for resistance to host or environmental stresses including a putative carbonate permease, heavy metal exporters and multidrug efflux pumps. It is less metabolically dependent on its host than other Chlamydiae, as it encodes the capacity to synthesize some nucleotides, amino acids, lipids and other cofactors (adapted from PMID 20531937). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumChlamydiota
ClassChlamydiia
OrderParachlamydiales
FamilyWaddliaceae
GenusWaddlia
SpeciesWaddlia chondrophila
StrainWSU 86-1044

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatHostAssociated
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityYes

Genome Summary

Waddlia chondrophila WSU 86-1044, complete sequence.

Gene Summary

Adenine Count

595725 bp

Thymine Count

594062 bp

Guanine Count

465340 bp

Cytosine Count

461185 bp

Genome Length

2116312 bp

Protein-coding Genes

1868 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinWCW_RS04670Not AvailableNegative1035028 - 103555820259.2
sodium-dependent transporterWCW_RS04675O34383Positive1035756 - 103711749398.4
holliday junction branch migration dna helicase ruvbWCW_RS04680Q6MC67Positive1037114 - 103811237095.1
spoiid/lytb domain-containing proteinWCW_RS04685Not AvailablePositive1038200 - 103904230654.9
trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase queaWCW_RS04690Q183N9Positive1039106 - 104013138721.1
cest family type iii secretion system chaperoneWCW_RS04695Not AvailablePositive1040351 - 104085718497.2
hypothetical proteinWCW_RS04700Not AvailableNegative1040899 - 104175033252.8
single-stranded dna-binding proteinWCW_RS04705Q899R2Positive1041826 - 104224515730.3
leucyl aminopeptidaseWCW_RS04710Q6MC72Positive1042262 - 104372852508.7
aspartate-semialdehyde dehydrogenaseWCW_RS04715Q75FC8Positive1043863 - 104488237232.0

Displaying genes 941 – 950 of 1935 in total

Metabolites

1681 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1681 metabolites

Health Effects

No health effects information available for this bacterium.