Phocaeicola vulgatus PC510

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus PC510 is a Gram-positive, rod-shaped bacterium that typically exists in a single-cell arrangement and is classified as an anaerobe. This microbe is host-associated, suggesting a symbiotic relationship with its host organism, potentially contributing to the host's microbiome dynamics. As an anaerobic organism, P. vulgatus PC510 thrives in environments devoid of oxygen, which is characteristic of many gut-associated microbes. Understanding the specific conditions under which this bacterium operates can illuminate its role within the host's gastrointestinal tract, where it may participate in various metabolic processes, including fermentation. The presence of P. vulgatus PC510 in the host-associated environment highlights the complex interactions that occur within microbial communities and their significance in maintaining host health. Further exploration of this bacterium's functional roles and interactions could yield insights into its contributions to nutrient metabolism and host immune modulation, underscoring the importance of anaerobic microbes in health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
StrainPC510

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus PC510
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus PC510 contig00004, whole genome shotgun

Gene Summary

Adenine Count

1359298 bp

Thymine Count

1396111 bp

Guanine Count

1037487 bp

Cytosine Count

988803 bp

Genome Length

4781702 bp

Protein-coding Genes

3956 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane insertion signal domain proteinCUU_0054Not AvailableNegative2901875 - 290246221981.3
glycosyl hydrolase family 20, catalytic domain proteinCUU_0055Not AvailableNegative2902670 - 290462574324.6
dna mismatch repair protein mutsCUU_0056Not AvailableNegative2904699 - 290735099450.5
conserved hypothetical proteinCUU_0057Not AvailablePositive2907430 - 290793619380.2
Trna-glnNot AvailableNot AvailablePositive2908067 - 2908137Not Available
wd40-like proteinCUU_0059Not AvailablePositive2908272 - 2911526121894.0
tyrosine--trna ligaseCUU_0060Not AvailableNegative2911651 - 291294348043.5
hydrolase, tatd familyCUU_0061Not AvailableNegative2913023 - 291365224010.2
conserved hypothetical protein yiddCUU_0062Not AvailableNegative2913667 - 29138888364.46
putative ribonuclease p protein componentCUU_0063Not AvailableNegative2913885 - 291427715158.8

Displaying genes 2411 – 2420 of 4019 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.