[Enterobacter] lignolyticus SCF1

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Pluralibacter

Description

Enterobacter lignolyticus SCF1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This species is nonsporulating and exhibits facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions. Its habitat primarily includes soil, where it likely interacts with a diverse array of microbial communities and contributes to soil ecology. The ability of E. lignolyticus SCF1 to adapt to both aerobic and anaerobic environments suggests a versatile metabolic capability, which may involve the degradation of complex organic compounds. Given the genus Enterobacter’s known associations with the degradation of lignocellulosic materials, E. lignolyticus SCF1 may play a role in the breakdown of plant-derived substances within its soil habitat. This could have implications for nutrient cycling and the maintenance of soil health, as the decomposition of organic material is crucial for the replenishment of soil nutrients. Understanding the metabolic pathways and ecological roles of E. lignolyticus SCF1 could provide insights into its potential applications in bioremediation or agricultural practices aimed at enhancing soil quality and promoting sustainable land use. Further research into its interactions with other soil microbes and its specific metabolic capabilities will be essential for elucidating its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusPluralibacter
Species[Enterobacter] lignolyticus
StrainSCF1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranes2
Image of [Enterobacter] lignolyticus SCF1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

[Enterobacter] lignolyticus SCF1, complete sequence.

Gene Summary

Adenine Count

1032570 bp

Thymine Count

1036600 bp

Guanine Count

1372293 bp

Cytosine Count

1372586 bp

Genome Length

4814049 bp

Protein-coding Genes

4350 genes

Non-Coding Genes

208 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosomal protein s16ENTCL_RS05530Not AvailablePositive1164740 - 11649889047.93
ribosome maturation factor rimmENTCL_RS05535Not AvailablePositive1165007 - 116555520561.5
trna (guanosine(37)-n1)-methyltransferase trmdENTCL_RS05540Not AvailablePositive1165601 - 116636828236.8
50s ribosomal protein l19ENTCL_RS05545Not AvailablePositive1166409 - 116675613134.0
PagENTCL_RS05550Not AvailableNegative1166871 - 11670597179.6
Late control d family proteinENTCL_RS05555Not AvailableNegative1167134 - 116821039261.3
Tail proteinENTCL_RS05560Not AvailableNegative1168210 - 116867717040.6
Tail length determinatorENTCL_RS22380Not AvailableNegative1168696 - 117033058547.7
Tail proteinENTCL_RS22705Not AvailableNegative1170323 - 11704424565.53
Tail proteinENTCL_RS05570Not AvailableNegative1170475 - 11707569825.0

Displaying genes 21 – 30 of 4558 in total

Metabolites

1825 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1825 metabolites

Health Effects

No health effects information available for this bacterium.