Gardnerella vaginalis 6420B

Gram-positiveRodNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Gardnerella

Description

Gardnerella vaginalis 6420B is a Gram-positive, nonsporulating rod-shaped bacterium, primarily identified as a chemoheterotroph with an optimal growth temperature of 37.0°C. This microbe is typically associated with host environments, indicating its role in specific ecological niches within the human body. As an anaerobic organism, Gardnerella vaginalis 6420B thrives in low-oxygen conditions, which are commonly found in the vaginal microbiome, where it coexists with a diverse array of other microbial species. The characteristics of Gardnerella vaginalis 6420B reflect its adaptation to a host-associated habitat, suggesting a potential role in maintaining the balance of the vaginal microbiota. It metabolizes organic compounds derived from the host or other microorganisms, thus playing a part in the complex interactions within the vaginal ecosystem. Understanding the traits of Gardnerella vaginalis 6420B can offer insights into the dynamics of microbial populations and their contributions to host health, particularly in relation to maintaining a healthy vaginal environment. Further research is warranted to explore its interactions with other microbes and its potential influence on the overall microbial community structure.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusGardnerella
SpeciesGardnerella vaginalis
Strain6420B

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Gardnerella vaginalis 6420B
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Gardnerella vaginalis 6420B ctg00017, whole genome shotgun

Gene Summary

Adenine Count

440319 bp

Thymine Count

423107 bp

Guanine Count

307058 bp

Cytosine Count

323110 bp

Genome Length

1493594 bp

Protein-coding Genes

1142 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pfkb family sugar kinaseCGSMWGv6420B_01061Not AvailableNegative286680 - 28758233205.4
xaa-pro aminopeptidaseCGSMWGv6420B_01066P0A3Z1Negative287866 - 28946159453.6
folylpolyglutamate synthaseCGSMWGv6420B_01071I6Y0R5Positive289740 - 29119753389.9
aspartate racemaseCGSMWGv6420B_01076P29079Negative291216 - 29194426671.0
hypothetical proteinCGSMWGv6420B_01081H8L902Negative291980 - 29322148100.4
udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligaseCGSMWGv6420B_01086Q8G4M3Negative293345 - 29514167411.5
dna polymerase iii epsilon subunit-like 3'-5' exonucleaseCGSMWGv6420B_01091Not AvailableNegative295167 - 29594629051.4
rna polymerase sigma factor rpoeCGSMWGv6420B_01096B3Q6P8Positive296069 - 29677326987.1
hypothetical proteinCGSMWGv6420B_01101P0AAR3Negative297054 - 29755417497.0
glyceraldehyde-3-phosphate dehydrogenaseCGSMWGv6420B_01106O32755Negative298054 - 29910937960.7

Displaying genes 221 – 230 of 1190 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

67 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001775(9Z)-octadecenoateC18H33O2Chemical structure of (9Z)-octadecenoateNot available
Average281.4534Da
Monoisotopic281.2480553Da

Displaying 1–10 of 67 metabolites

Health Effects

No health effects information available for this bacterium.