Planktotalea frisia str. SH6-1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Planktotalea

Description

Planktotalea frisia strain SH6-1 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism, thriving optimally at a temperature of 25.0°C. This organism is characterized by its rod-like morphology, which is typical of many members within the broader context of environmental bacteria. The aerobic nature of Planktotalea frisia indicates that it requires oxygen for its growth and metabolic processes, which may influence its habitat preferences and interactions within its ecosystem. The optimal growth temperature of 25.0°C suggests that this strain is well-suited for mesophilic environments, which typically include temperate aquatic systems or soil environments where moderate temperatures prevail. While specific ecological roles of Planktotalea frisia str. SH6-1 are not detailed, its traits indicate a potential involvement in nutrient cycling, particularly in aerobic environments where it may participate in the decomposition of organic materials or the mineralization of nutrients. An intriguing aspect of Planktotalea frisia str. SH6-1 is its adaptation to aerobic conditions, which may position it as a key player in the microbial community dynamics of its niche, particularly in balancing oxygen levels and organic matter decomposition. This adaptability highlights the interconnectedness of microbial life and its fundamental roles in maintaining ecosystem health and function.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusPlanktotalea
SpeciesPlanktotalea frisia
StrainSH6-1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Planktotalea frisia strain SH6-1 PFRI_contig000227, whole genome

Gene Summary

Adenine Count

950073 bp

Thymine Count

948589 bp

Guanine Count

1104133 bp

Cytosine Count

1103941 bp

Genome Length

4106736 bp

Protein-coding Genes

4102 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative epimerase/dehydratasePFRI_34470Not AvailableNegative3411942 - 341290734886.6
2-keto-3-deoxy-l-fuconate dehydrogenasePFRI_34480Not AvailablePositive3413108 - 341385725998.8
ureidoglycolate lyasePFRI_34490Not AvailablePositive3413895 - 341474330433.3
glyoxylate/hydroxypyruvate reductase bPFRI_34500Not AvailablePositive3414736 - 341565933016.6
cysteine/o-acetylserine efflux proteinPFRI_34510Not AvailablePositive3415678 - 341626820807.5
putative hydroxypyruvate isomerase ygbmPFRI_34520Not AvailableNegative3416354 - 341711827493.8
leucine/isoleucine/valine transporter permease subunitPFRI_34530Not AvailableNegative3417190 - 341821536472.6
high-affinity branched-chain amino acid transport system permease protein livhPFRI_34540Not AvailableNegative3418212 - 341907529865.7
high-affinity branched-chain amino acid transport atp-binding protein livfPFRI_34550Not AvailableNegative3419076 - 341978324931.3
lipopolysaccharide export system atp-binding protein lptbPFRI_34560Not AvailableNegative3419776 - 342050425447.9

Displaying genes 3451 – 3460 of 4173 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.