Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktotalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktotalea |
| Species | Planktotalea frisia |
| Strain | SH6-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
950073 bp
Thymine Count
948589 bp
Guanine Count
1104133 bp
Cytosine Count
1103941 bp
Genome Length
4106736 bp
Protein-coding Genes
4102 genes
Non-Coding Genes
71 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative epimerase/dehydratase | PFRI_34470 | Not Available | Negative | 3411942 - 3412907 | 34886.6 |
| 2-keto-3-deoxy-l-fuconate dehydrogenase | PFRI_34480 | Not Available | Positive | 3413108 - 3413857 | 25998.8 |
| ureidoglycolate lyase | PFRI_34490 | Not Available | Positive | 3413895 - 3414743 | 30433.3 |
| glyoxylate/hydroxypyruvate reductase b | PFRI_34500 | Not Available | Positive | 3414736 - 3415659 | 33016.6 |
| cysteine/o-acetylserine efflux protein | PFRI_34510 | Not Available | Positive | 3415678 - 3416268 | 20807.5 |
| putative hydroxypyruvate isomerase ygbm | PFRI_34520 | Not Available | Negative | 3416354 - 3417118 | 27493.8 |
| leucine/isoleucine/valine transporter permease subunit | PFRI_34530 | Not Available | Negative | 3417190 - 3418215 | 36472.6 |
| high-affinity branched-chain amino acid transport system permease protein livh | PFRI_34540 | Not Available | Negative | 3418212 - 3419075 | 29865.7 |
| high-affinity branched-chain amino acid transport atp-binding protein livf | PFRI_34550 | Not Available | Negative | 3419076 - 3419783 | 24931.3 |
| lipopolysaccharide export system atp-binding protein lptb | PFRI_34560 | Not Available | Negative | 3419776 - 3420504 | 25447.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
