Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktotalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktotalea |
| Species | Planktotalea frisia |
| Strain | SH6-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
950073 bp
Thymine Count
948589 bp
Guanine Count
1104133 bp
Cytosine Count
1103941 bp
Genome Length
4106736 bp
Protein-coding Genes
4102 genes
Non-Coding Genes
71 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sarcosine oxidase, gamma subunit family | PFRI_14490 | Not Available | Negative | 1441502 - 1442068 | 20200.0 |
| sarcosine oxidase subunit alpha | PFRI_14500 | Not Available | Negative | 1442061 - 1445012 | 105712.0 |
| sarcosine oxidase subunit delta | PFRI_14510 | Not Available | Negative | 1445009 - 1445296 | 10966.8 |
| sarcosine oxidase subunit beta | PFRI_14520 | Not Available | Negative | 1445313 - 1446563 | 45637.6 |
| glycine betaine/carnitine transport binding protein gbuc precursor | PFRI_14530 | Not Available | Positive | 1446854 - 1447795 | 34183.1 |
| glycine betaine transport atp-binding protein opuaa | PFRI_14540 | Not Available | Positive | 1447868 - 1448887 | 37517.4 |
| glycine betaine transport system permease protein opuab | PFRI_14550 | Not Available | Positive | 1448887 - 1450860 | 72224.9 |
| 4-hydroxyphenylpyruvate dioxygenase | PFRI_14560 | Not Available | Negative | 1451232 - 1453118 | 69433.7 |
| quinate/shikimate dehydrogenase | PFRI_14570 | Not Available | Negative | 1453115 - 1453960 | 29329.3 |
| 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase | PFRI_14580 | Not Available | Negative | 1453957 - 1454727 | 27041.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
