Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | UMNK88 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Escherichia coli UMNK88 plasmid pUMNK88_91, complete sequence.
Gene Summary
Adenine Count
21816 bp
Thymine Count
23312 bp
Guanine Count
23528 bp
Cytosine Count
22212 bp
Genome Length
90868 bp
Protein-coding Genes
101 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
6
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv conjugative transfer system protein tral | UMNK88_RS28760 | Not Available | Positive | 54774 - 55055 | 10702.6 |
| trae/trak family type iv conjugative transfer system protein | UMNK88_RS28765 | Not Available | Positive | 55052 - 55678 | 24214.8 |
| type-f conjugative transfer system secretin trak | UMNK88_RS28770 | Not Available | Positive | 55662 - 56579 | 32582.5 |
| trab/virb10 family protein | UMNK88_RS28775 | Not Available | Positive | 56579 - 57892 | 47411.2 |
| type iv conjugative transfer system lipoprotein trav | UMNK88_RS28780 | Not Available | Positive | 57889 - 58467 | 20783.6 |
| traa family conjugative transfer protein | UMNK88_RS28785 | Not Available | Positive | 58471 - 58863 | 13437.6 |
| hypothetical protein | UMNK88_RS28790 | Not Available | Positive | 59144 - 60399 | 46575.1 |
| extended-spectrum class c beta-lactamase cmy-2 | UMNK88_RS28800 | Not Available | Positive | 60723 - 61868 | 42005.6 |
| lipocalin family protein | UMNK88_RS28805 | Not Available | Positive | 61962 - 62495 | 19976.9 |
| quaternary ammonium compound efflux smr transporter suge | UMNK88_RS28810 | Not Available | Negative | 62492 - 62809 | 10898.0 |
Pathways
12367 pathways
Health Effects
No health effects information available for this bacterium.





