Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | UMNK88 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Escherichia coli UMNK88 plasmid pUMNK88_91, complete sequence.
Gene Summary
Adenine Count
21816 bp
Thymine Count
23312 bp
Guanine Count
23528 bp
Cytosine Count
22212 bp
Genome Length
90868 bp
Protein-coding Genes
101 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
6
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deaminated glutathione amidase | UMNK88_RS03255 | Not Available | Positive | 683008 - 683796 | 28683.0 |
| twin-arginine translocase subunit tate | UMNK88_RS03260 | Not Available | Positive | 683925 - 684128 | 7024.71 |
| lipoyl synthase | UMNK88_RS03265 | Not Available | Negative | 684229 - 685194 | 36073.8 |
| ybef family transcriptional regulator | UMNK88_RS03270 | Not Available | Negative | 685403 - 686356 | 35918.4 |
| lipoyl(octanoyl) transferase lipb | UMNK88_RS03280 | Not Available | Negative | 686615 - 687256 | 23884.0 |
| duf493 family protein ybed | UMNK88_RS03285 | Not Available | Negative | 687357 - 687620 | 9827.92 |
| d-alanyl-d-alanine carboxypeptidase daca | UMNK88_RS03290 | Not Available | Negative | 687730 - 688941 | 44446.5 |
| endolytic peptidoglycan transglycosylase rlpa | UMNK88_RS03295 | Not Available | Negative | 689080 - 690168 | 37530.1 |
| peptidoglycan glycosyltransferase mrdb | UMNK88_RS03300 | Not Available | Negative | 690179 - 691291 | 40478.6 |
| peptidoglycan dd-transpeptidase mrda | UMNK88_RS03305 | Not Available | Negative | 691294 - 693195 | 70860.6 |
Pathways
12367 pathways
Health Effects
No health effects information available for this bacterium.





