Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | UMNK88 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Escherichia coli UMNK88 plasmid pUMNK88_91, complete sequence.
Gene Summary
Adenine Count
21816 bp
Thymine Count
23312 bp
Guanine Count
23528 bp
Cytosine Count
22212 bp
Genome Length
90868 bp
Protein-coding Genes
101 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
6
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan meso-diaminopimelic acid protein amidase | UMNK88_RS01270 | Not Available | Negative | 277911 - 278651 | 28022.8 |
| type ii toxin-antitoxin system mrna interferase toxin yafq | UMNK88_RS01275 | Not Available | Negative | 278807 - 279085 | 10801.2 |
| type ii toxin-antitoxin system antitoxin dinj | UMNK88_RS01280 | Not Available | Negative | 279088 - 279348 | 9392.3 |
| c40 family peptidase | UMNK88_RS01285 | Not Available | Positive | 279564 - 280307 | 28610.2 |
| rep-associated tyrosine transposase rayt | UMNK88_RS01290 | Not Available | Positive | 280483 - 280980 | 20042.8 |
| methyl-accepting chemotaxis protein | UMNK88_RS01295 | Not Available | Negative | 281204 - 282916 | 62200.9 |
| putative lateral flagellar export/assembly protein lafu | UMNK88_RS01300 | Not Available | Positive | 282888 - 283673 | 28912.9 |
| dna polymerase iv | UMNK88_RS01305 | Not Available | Positive | 283744 - 284799 | 39518.2 |
| type i toxin-antitoxin system antitoxin yafn | UMNK88_RS01310 | Not Available | Positive | 284851 - 285144 | 11234.4 |
| type ii toxin-antitoxin system mrna interferase toxin yafo | UMNK88_RS01315 | Not Available | Positive | 285147 - 285545 | 15487.7 |
Pathways
12367 pathways
Health Effects
No health effects information available for this bacterium.





