Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | UMNK88 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Escherichia coli UMNK88 plasmid pUMNK88_91, complete sequence.
Gene Summary
Adenine Count
21816 bp
Thymine Count
23312 bp
Guanine Count
23528 bp
Cytosine Count
22212 bp
Genome Length
90868 bp
Protein-coding Genes
101 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
6
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system baseplate subunit tssk | UMNK88_RS01160 | Not Available | Negative | 253637 - 254968 | 49909.7 |
| type vi secretion system lipoprotein tssj | UMNK88_RS01165 | Not Available | Negative | 254971 - 255495 | 19395.0 |
| type vi secretion system-associated fha domain protein tagh | UMNK88_RS01170 | Not Available | Negative | 255492 - 256772 | 47386.8 |
| type vi secretion system baseplate subunit tssg | UMNK88_RS01175 | Not Available | Negative | 256797 - 257879 | 40294.2 |
| type vi secretion system baseplate subunit tssf | UMNK88_RS01180 | Not Available | Negative | 257843 - 259693 | 71190.0 |
| type vi secretion system baseplate subunit tsse | UMNK88_RS01185 | Not Available | Negative | 259697 - 260110 | 15494.0 |
| type vi secretion system contractile sheath large subunit | UMNK88_RS01190 | Not Available | Negative | 260117 - 261592 | 55733.1 |
| hypothetical protein | UMNK88_RS01195 | Not Available | Negative | 261643 - 261867 | 8411.01 |
| type vi secretion system contractile sheath small subunit | UMNK88_RS01200 | Not Available | Negative | 261902 - 262402 | 18052.4 |
| hcp family type vi secretion system effector | UMNK88_RS01210 | Not Available | Positive | 263097 - 263615 | 19256.8 |
Pathways
12367 pathways
Health Effects
No health effects information available for this bacterium.





