Methylobacterium oryzae CBMB20

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Methylobacteriaceae

Genus

Methylobacterium

Description

Methylobacterium oryzae CBMB20 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and a non-spore-forming nature. This microbe thrives at an optimal temperature of approximately 29.0°C, indicating a preference for moderately warm environments typical of various soil and plant-associated habitats. As a member of the Methylobacterium genus, M. oryzae CBMB20 is expected to utilize one-carbon compounds, such as methanol, which are often derived from plant exudates. The aerobic requirement of this bacterium suggests that it plays a role in the cycling of carbon in environments rich in organic material, particularly in association with plant roots. The specific non-spore-forming characteristic indicates that M. oryzae CBMB20 may rely on its ability to proliferate under favorable conditions rather than entering a dormant state, which could affect its survival strategies in fluctuating environments. Understanding the physiological traits and ecological roles of Methylobacterium oryzae CBMB20 could provide insights into its potential applications in agriculture, particularly in promoting plant growth or bioremediation processes in nutrient-rich soils.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylobacterium
SpeciesMethylobacterium oryzae
StrainCBMB20

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Methylobacterium oryzae CBMB20
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
Habitatstem surface of rice
Biotic relationshipNot Available
Host(s)Oryza sativa, Arabidopsis thaliana
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methylobacterium oryzae CBMB20 chromosome, complete genome.

Gene Summary

Adenine Count

949755 bp

Thymine Count

950441 bp

Guanine Count

2195423 bp

Cytosine Count

2190998 bp

Genome Length

6286629 bp

Protein-coding Genes

5743 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyltransferase family 2 proteinMOC_RS07240Not AvailablePositive1642370 - 164309225603.9
hypothetical proteinMOC_RS07245Not AvailableNegative1643103 - 164376524685.4
abc transporter permeaseMOC_RS07250Not AvailableNegative1643796 - 164535555956.6
atp-binding cassette domain-containing proteinMOC_RS07255Not AvailableNegative1645352 - 164603223840.1
putative selenate abc transporter substrate-binding proteinMOC_RS07260Not AvailableNegative1646046 - 164693031509.6
radical sam/spasm domain-containing proteinMOC_RS07265Not AvailablePositive1647314 - 164838438735.4
tigr01459 family had-type hydrolaseMOC_RS07270Not AvailablePositive1648377 - 164917427575.2
selenide, water dikinase seldMOC_RS07275Not AvailablePositive1649226 - 165027535812.0
nucleoside phosphorylaseMOC_RS07280Not AvailablePositive1650285 - 165108528063.5
selenoneine synthase senaMOC_RS07285Not AvailableNegative1651082 - 165235047192.0

Displaying genes 1521 – 1530 of 5837 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

11 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002243S-methyl-5'-thioinosineC11H14N4O4SChemical structure of S-methyl-5'-thioinosineNot available
Average298.32Da
Monoisotopic298.0735761Da
BASm0003107S-inosyl-L-homocysteineC14H19N5O6SChemical structure of S-inosyl-L-homocysteineNot available
Average385.396Da
Monoisotopic385.1056041Da
BASm0003208L-2-acetamido-6-oxoheptanedioateC9H11NO6Chemical structure of L-2-acetamido-6-oxoheptanedioateNot available
Average229.189Da
Monoisotopic229.059734238Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003696N-acetyl-(2S,6S)-2,6-diaminoheptanedioateC9H15N2O5Chemical structure of N-acetyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average231.229Da
Monoisotopic231.098645171Da
BASm0003763(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateC11H12NO6PChemical structure of (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateNot available
Average285.1898Da
Monoisotopic285.0402236Da
BASm0003866keto-D-fructuronateC6H9O7Chemical structure of keto-D-fructuronateNot available
Average193.132Da
Monoisotopic193.03537621Da

Displaying 1–10 of 11 metabolites

Health Effects

No health effects information available for this bacterium.