Streptomyces scabiei 87.22

Gram-positiveTailedMotileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Kitasatosporales

Family

Streptomycetaceae

Genus

Streptomyces

Description

Streptomyces scabiei 87.22. Streptomyces scabiei 87.22 will be used for comparative analysis with other plant pathogenic actinomycetes. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces scabiei
Strain87.22

Profile

Physiology
Gram staining propertiesPositive
ShapeTailed
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Streptomyces scabiei 87.22
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Solanum tuberosum, Daucus carota, Raphanus sativus
Cell arrangementNot Available
SporulationSporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Streptomyces scabiei 87.22, complete sequence.

Gene Summary

Adenine Count

1456718 bp

Thymine Count

1440447 bp

Guanine Count

3612627 bp

Cytosine Count

3638903 bp

Genome Length

10148695 bp

Protein-coding Genes

8740 genes

Non-Coding Genes

174 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
formyltetrahydrofolate deformylaseSCAB_RS03270Not AvailablePositive780914 - 78178932894.1
5,10-methylenetetrahydrofolate reductaseSCAB_RS03275Not AvailableNegative781934 - 78277030486.8
choline dehydrogenaseSCAB_RS03280Not AvailableNegative782774 - 78444461545.2
iclr family transcriptional regulatorSCAB_RS03285Not AvailablePositive784646 - 78539226805.5
aromatic ring-hydroxylating oxygenase subunit alphaSCAB_RS03290Not AvailableNegative785394 - 78652442408.0
nad(p)/fad-dependent oxidoreductaseSCAB_RS03295Not AvailableNegative786654 - 78781740055.8
bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunitSCAB_RS03300Not AvailableNegative787814 - 78817612971.3
bcct family transporterSCAB_RS03305Not AvailableNegative788461 - 79020961152.5
fdhf/ydep family oxidoreductaseSCAB_RS03310Not AvailableNegative790352 - 79266784291.0
s-(hydroxymethyl)mycothiol dehydrogenaseSCAB_RS03315Not AvailableNegative792940 - 79402537580.2

Displaying genes 821 – 830 of 8914 in total

Metabolites

463 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 463 metabolites

Health Effects

Health ConditionRelationReference
ScabCausesPMC11609053
Common scabCausesPMC12542781
Common scab diseaseCausesPMC12648119
Common scabCausesPMC8914351

Displaying health effects 1 – 4 of 4 in total