Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Kitasatosporales
Family
Streptomycetaceae
Genus
Streptomyces
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Kitasatosporales |
| Family | Streptomycetaceae |
| Genus | Streptomyces |
| Species | Streptomyces scabiei |
| Strain | 87.22 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Tailed |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Raphanus sativus |
| Cell arrangement | Not Available |
| Sporulation | Sporulating |
| Energy source | Not Available |
| Pathogenicity | Yes |
Gene Summary
Adenine Count
1456718 bp
Thymine Count
1440447 bp
Guanine Count
3612627 bp
Cytosine Count
3638903 bp
Genome Length
10148695 bp
Protein-coding Genes
8740 genes
Non-Coding Genes
174 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xanthine dehydrogenase family protein molybdopterin-binding subunit | SCAB_RS39275 | Not Available | Positive | 9109516 - 9111636 | 74791.4 |
| xdhc family protein | SCAB_RS39280 | Not Available | Positive | 9111629 - 9112819 | 41015.8 |
| hypothetical protein | SCAB_RS48000 | Not Available | Positive | 9112917 - 9113219 | 10500.8 |
| ricin domain-containing protein | SCAB_RS39290 | Not Available | Negative | 9113163 - 9114560 | 48970.1 |
| peptidoglycan-binding domain-containing protein | SCAB_RS39295 | Not Available | Positive | 9114825 - 9115724 | 30273.1 |
| tetratricopeptide repeat protein | SCAB_RS39300 | Not Available | Negative | 9115785 - 9119390 | 131782.0 |
| family 2 encapsulin nanocompartment cargo protein terpene cyclase | SCAB_RS39305 | Not Available | Negative | 9119494 - 9120543 | 38545.7 |
| family 2b encapsulin nanocompartment shell protein | SCAB_RS39310 | Not Available | Negative | 9120555 - 9121982 | 53061.3 |
| cobalt-precorrin-5b (c(1))-methyltransferase | SCAB_RS39315 | Not Available | Negative | 9122557 - 9123225 | 24404.1 |
| hypothetical protein | SCAB_RS46750 | Not Available | Negative | 9123274 - 9123420 | 5030.74 |
Pathways
530 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scab | Causes | PMC11609053 |
| Common scab | Causes | PMC12542781 |
| Common scab disease | Causes | PMC12648119 |
| Common scab | Causes | PMC8914351 |