Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Kitasatosporales
Family
Streptomycetaceae
Genus
Streptomyces
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Kitasatosporales |
| Family | Streptomycetaceae |
| Genus | Streptomyces |
| Species | Streptomyces scabiei |
| Strain | 87.22 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Tailed |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Raphanus sativus |
| Cell arrangement | Not Available |
| Sporulation | Sporulating |
| Energy source | Not Available |
| Pathogenicity | Yes |
Gene Summary
Adenine Count
1456718 bp
Thymine Count
1440447 bp
Guanine Count
3612627 bp
Cytosine Count
3638903 bp
Genome Length
10148695 bp
Protein-coding Genes
8740 genes
Non-Coding Genes
174 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3040 domain-containing protein | SCAB_RS32425 | Not Available | Positive | 7511029 - 7511430 | 14873.2 |
| duf3488 and duf4129 domain-containing transglutaminase family protein | SCAB_RS32430 | Not Available | Negative | 7511750 - 7514275 | 88556.1 |
| duf58 domain-containing protein | SCAB_RS32435 | Not Available | Negative | 7514272 - 7515630 | 48305.8 |
| aaa family atpase | SCAB_RS32440 | Not Available | Negative | 7515627 - 7516667 | 38030.6 |
| beta-class carbonic anhydrase | SCAB_RS32445 | Not Available | Negative | 7516954 - 7517499 | 19757.4 |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase rsmh | SCAB_RS32450 | Not Available | Positive | 7517826 - 7518782 | 34741.0 |
| membrane protein | SCAB_RS32455 | Not Available | Positive | 7518922 - 7519524 | 20742.9 |
| peptidoglycan d,d-transpeptidase ftsi family protein | SCAB_RS32460 | Not Available | Positive | 7519716 - 7521497 | 63235.0 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | SCAB_RS32465 | Not Available | Positive | 7521572 - 7523239 | 57963.7 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | SCAB_RS32470 | Not Available | Positive | 7523244 - 7524659 | 48785.3 |
Pathways
530 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scab | Causes | PMC11609053 |
| Common scab | Causes | PMC12542781 |
| Common scab disease | Causes | PMC12648119 |
| Common scab | Causes | PMC8914351 |