Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Kitasatosporales
Family
Streptomycetaceae
Genus
Streptomyces
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Kitasatosporales |
| Family | Streptomycetaceae |
| Genus | Streptomyces |
| Species | Streptomyces scabiei |
| Strain | 87.22 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Tailed |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Raphanus sativus |
| Cell arrangement | Not Available |
| Sporulation | Sporulating |
| Energy source | Not Available |
| Pathogenicity | Yes |
Gene Summary
Adenine Count
1456718 bp
Thymine Count
1440447 bp
Guanine Count
3612627 bp
Cytosine Count
3638903 bp
Genome Length
10148695 bp
Protein-coding Genes
8740 genes
Non-Coding Genes
174 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | SCAB_RS23160 | Not Available | Positive | 5422631 - 5423662 | 38022.2 |
| Phage integrase | SCAB_RS23165 | Not Available | Positive | 5423662 - 5425341 | 61436.7 |
| Attr | Not Available | Not Available | Positive | 5425562 - 5425608 | Not Available |
| Integrase | SCAB_RS23170 | Not Available | Negative | 5425640 - 5427277 | 60429.6 |
| Hypothetical protein | SCAB_RS29145 | Not Available | Positive | 6770187 - 6770633 | 15347.8 |
| Tail spike-like protein | SCAB_RS29150 | Not Available | Positive | 6770636 - 6771556 | 30373.8 |
| hypothetical protein | SCAB_RS29155 | Not Available | Positive | 6771550 - 6771849 | 10620.5 |
| hypothetical protein | SCAB_RS29160 | Not Available | Negative | 6771846 - 6772055 | 7488.44 |
| Hnh endonuclease domain protein | SCAB_RS29165 | Not Available | Positive | 6772105 - 6772488 | 14185.5 |
| Dnaq-like exonuclease | SCAB_RS29170 | Not Available | Positive | 6772485 - 6773108 | 23774.2 |
Pathways
530 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scab | Causes | PMC11609053 |
| Common scab | Causes | PMC12542781 |
| Common scab disease | Causes | PMC12648119 |
| Common scab | Causes | PMC8914351 |