Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Kitasatosporales
Family
Streptomycetaceae
Genus
Streptomyces
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Kitasatosporales |
| Family | Streptomycetaceae |
| Genus | Streptomyces |
| Species | Streptomyces scabiei |
| Strain | 87.22 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Tailed |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Raphanus sativus |
| Cell arrangement | Not Available |
| Sporulation | Sporulating |
| Energy source | Not Available |
| Pathogenicity | Yes |
Gene Summary
Adenine Count
1456718 bp
Thymine Count
1440447 bp
Guanine Count
3612627 bp
Cytosine Count
3638903 bp
Genome Length
10148695 bp
Protein-coding Genes
8740 genes
Non-Coding Genes
174 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtp cyclohydrolase ii | SCAB_RS23380 | Not Available | Positive | 5464882 - 5465532 | 23255.8 |
| pp2c family protein-serine/threonine phosphatase | SCAB_RS23385 | Not Available | Positive | 5465648 - 5466760 | 39336.2 |
| m23 family metallopeptidase | SCAB_RS23390 | Not Available | Positive | 5467197 - 5468258 | 36273.9 |
| aldo/keto reductase | SCAB_RS23395 | Not Available | Positive | 5468423 - 5469367 | 33094.8 |
| prsw family intramembrane metalloprotease | SCAB_RS23400 | Not Available | Negative | 5469391 - 5470752 | 49287.3 |
| trna (guanosine(46)-n7)-methyltransferase trmb | SCAB_RS23405 | Not Available | Negative | 5470851 - 5471717 | 32268.2 |
| l-2-hydroxyglutarate oxidase | SCAB_RS23410 | Not Available | Negative | 5471783 - 5472994 | 43068.1 |
| hypothetical protein | SCAB_RS23415 | Not Available | Negative | 5473204 - 5474628 | 50886.2 |
| asparagine synthase-related protein | SCAB_RS23420 | Not Available | Positive | 5475342 - 5477435 | 72369.7 |
| sigma-70 family rna polymerase sigma factor | SCAB_RS23425 | Not Available | Negative | 5477508 - 5479349 | 63824.1 |
Pathways
398 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scab | Causes | PMC11609053 |
| Common scab | Causes | PMC12542781 |
| Common scab disease | Causes | PMC12648119 |
| Common scab | Causes | PMC8914351 |