Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Kitasatosporales
Family
Streptomycetaceae
Genus
Streptomyces
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Kitasatosporales |
| Family | Streptomycetaceae |
| Genus | Streptomyces |
| Species | Streptomyces scabiei |
| Strain | 87.22 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Tailed |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Raphanus sativus |
| Cell arrangement | Not Available |
| Sporulation | Sporulating |
| Energy source | Not Available |
| Pathogenicity | Yes |
Gene Summary
Adenine Count
1456718 bp
Thymine Count
1440447 bp
Guanine Count
3612627 bp
Cytosine Count
3638903 bp
Genome Length
10148695 bp
Protein-coding Genes
8740 genes
Non-Coding Genes
174 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SCAB_RS22685 | Not Available | Positive | 5340306 - 5340593 | 10543.4 |
| hypothetical protein | SCAB_RS45170 | Not Available | Positive | 5340706 - 5341035 | 11913.1 |
| hypothetical protein | SCAB_RS22690 | Not Available | Negative | 5341415 - 5341708 | 11323.4 |
| Trna-ser | Not Available | Not Available | Positive | 5341751 - 5341838 | Not Available |
| Ncrna_class:srp_rna | Not Available | Not Available | Positive | 5341957 - 5342053 | Not Available |
| dna polymerase iii subunit gamma and tau | SCAB_RS22700 | Not Available | Positive | 5342169 - 5344550 | 80190.0 |
| phosphoribosylamine--glycine ligase | SCAB_RS22705 | Not Available | Positive | 5344676 - 5345929 | 42568.5 |
| membrane protein | SCAB_RS22710 | Not Available | Positive | 5346395 - 5348644 | 76800.6 |
| n,n-dimethylformamidase beta subunit family domain-containing protein | SCAB_RS22715 | Not Available | Positive | 5348872 - 5350383 | 56489.0 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | SCAB_RS22720 | Not Available | Positive | 5350469 - 5351368 | 32930.7 |
Pathways
398 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scab | Causes | PMC11609053 |
| Common scab | Causes | PMC12542781 |
| Common scab disease | Causes | PMC12648119 |
| Common scab | Causes | PMC8914351 |